Publications by authors named "Navdeep Jaitly"

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MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
Brian L LaMarche, Kevin L Crowell, Navdeep Jaitly, Vladislav A Petyuk, Anuj R Shah

BMC Bioinformatics· February 2013

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Normalizing molecular docking rankings using virtually generated decoys.
Izhar Wallach, Navdeep Jaitly, Kong Nguyen, Matthieu Schapira, Ryan Lilien

J Chem Inf Model· August 2011

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A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy.
Navdeep Jaitly, Marcus A Brubaker, John L Rubinstein, Ryan H Lilien

Bioinformatics· October 2010

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A structure-based approach for mapping adverse drug reactions to the perturbation of underlying biological pathways.
Izhar Wallach, Navdeep Jaitly, Ryan Lilien

PLoS One· August 2010

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Novel Ser/Thr protein phosphatase 5 (PP5) regulated targets during DNA damage identified by proteomics analysis.
Bryan M Ham, Hemalatha Jayachandran, Feng Yang, Navdeep Jaitly, Ashoka D Polpitiya

J Proteome Res· February 2010

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Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation.
Charles Ansong, Hyunjin Yoon, Steffen Porwollik, Heather Mottaz-Brewer, Brianne O Petritis, Navdeep Jaitly

PLoS One· July 2009

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Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer.
Arzu Umar, Hyuk Kang, Annemieke M Timmermans, Maxime P Look, Marion E Meijer-van Gelder, Navdeep Jaitly

Mol Cell Proteomics· June 2009

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Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
Navdeep Jaitly, Anoop Mayampurath, Kyle Littlefield, Joshua N Adkins, Gordon A Anderson

BMC Bioinformatics· March 2009

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Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.
Wei-Jun Qian, Tao Liu, Vladislav A Petyuk, Marina A Gritsenko, Brianne O Petritis, Navdeep Jaitly

J Proteome Res· January 2009

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Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.
Aleksey V Tolmachev, Matthew E Monroe, Samuel O Purvine, Ronald J Moore, Navdeep Jaitly

Anal Chem· November 2008

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Application of the accurate mass and time tag approach in studies of the human blood lipidome.
Jie Ding, Christina M Sorensen, Navdeep Jaitly, Hongliang Jiang, Daniel J Orton

J Chromatogr B Analyt Technol Biomed Life Sci· August 2008

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DAnTE: a statistical tool for quantitative analysis of -omics data.
Ashoka D Polpitiya, Wei-Jun Qian, Navdeep Jaitly, Vladislav A Petyuk, Joshua N Adkins

Bioinformatics· July 2008

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The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.
Bryan M Ham, Feng Yang, Hemalatha Jayachandran, Navdeep Jaitly, Matthew E Monroe

J Proteome Res· June 2008

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DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
Anoop M Mayampurath, Navdeep Jaitly, Samuel O Purvine, Matthew E Monroe, Kenneth J Auberry

Bioinformatics· April 2008

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Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content.
Vladislav A Petyuk, Navdeep Jaitly, Ronald J Moore, Jie Ding, Thomas O Metz

Anal Chem· February 2008

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Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.
Feng Yang, Navdeep Jaitly, Hemalatha Jayachandran, Quanzhou Luo, Matthew E Monroe

J Proteome Res· November 2007

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Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.
Nitin Gupta, Stephen Tanner, Navdeep Jaitly, Joshua N Adkins, Mary Lipton

Genome Res· September 2007

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VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Matthew E Monroe, Nikola Tolić, Navdeep Jaitly, Jason L Shaw, Joshua N Adkins

Bioinformatics· August 2007

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Capillary LC coupled with high-mass measurement accuracy mass spectrometry for metabolic profiling.
Jie Ding, Christina M Sorensen, Qibin Zhang, Hongliang Jiang, Navdeep Jaitly

Anal Chem· August 2007

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Accurate mass measurements in proteomics.
Tao Liu, Mikhail E Belov, Navdeep Jaitly, Wei-Jun Qian, Richard D Smith

Chem Rev· August 2007

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Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.
Vladislav A Petyuk, Wei-Jun Qian, Mark H Chin, Haixing Wang, Eric A Livesay, Navdeep Jaitly

Genome Res· March 2007

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Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry.
Seema Sharma, David C Simpson, Nikola Tolić, Navdeep Jaitly, Anoop M Mayampurath

J Proteome Res· February 2007

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Proteomic approaches to bacterial differentiation.
Angela D Norbeck, Stephen J Callister, Matthew E Monroe, Navdeep Jaitly, Dwayne A Elias

J Microbiol Methods· December 2006

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Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration.
Aleksey V Tolmachev, Matthew E Monroe, Navdeep Jaitly, Vladislav A Petyuk, Joshua N Adkins

Anal Chem· December 2006

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Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline.
Navdeep Jaitly, Matthew E Monroe, Vladislav A Petyuk, Therese R W Clauss, Joshua N Adkins

Anal Chem· November 2006

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