Publications by authors named "Neil Clark"

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Continuous physiological monitoring for the detection of postoperative deterioration: a protocol for a multistage, multicentre, international, prospective cohort study.
Afra Jiwa, Malcolm M Cameron, Adesoji O Ademuyiwa, Adewale Adisa, Maria Lorena Aguilera Arévalo, Neil Clark

BMJ Open· October 2025

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Small theropod-dominated dinosaur footprint assemblages in the Middle Jurassic Valtos Sandstone and Kilmaluag Formations on the Isle of Skye, Scotland.
Tone Blakesley, Paige E dePolo, Dugald A Ross, Neil D L Clark, Stephen L Brusatte

R Soc Open Sci· September 2025

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Inflammation, stress and depression: An exploration of ketamine's therapeutic profile.
Jenessa N Johnston, Maximillian S Greenwald, Ioline D Henter, Christoph Kraus, Anahit Mkrtchian, Neil G Clark

Drug Discov Today· April 2023

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Somatic Symptom Severity, Not Injury Severity, Predicts Probable Posttraumatic Stress Disorder and Major Depressive Disorder in Wounded Service Members.
Alyssa A Soumoff, Neil G Clark, Elizabeth A Spinks, Patricia A Kemezis, Sorana Raiciulescu

J Trauma Stress· February 2022

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Novel track morphotypes from new tracksites indicate increased Middle Jurassic dinosaur diversity on the Isle of Skye, Scotland.
Paige E dePolo, Stephen L Brusatte, Thomas J Challands, Davide Foffa, Mark Wilkinson, Neil D L Clark

PLoS One· June 2020

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Cell-specific prediction and application of drug-induced gene expression profiles.
Rachel Hodos, Ping Zhang, Hao-Chih Lee, Qiaonan Duan, Zichen Wang, Neil R Clark

Pac Symp Biocomput· August 2018

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The long non-coding RNA promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis.
Ioanna Pavlaki, Farah Alammari, Bin Sun, Neil Clark, Tamara Sirey

EMBO J· May 2018

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Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks.
Mark Grimes, Benjamin Hall, Lauren Foltz, Tyler Levy, Klarisa Rikova, Neil R Clark

Sci Signal· May 2018

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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
Zichen Wang, Caroline D Monteiro, Kathleen M Jagodnik, Nicolas F Fernandez, Gregory W Gundersen, Neil R Clark

Nat Commun· September 2016

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L1000CDS: LINCS L1000 characteristic direction signatures search engine.
Qiaonan Duan, St Patrick Reid, Neil R Clark, Zichen Wang, Nicolas F Fernandez

NPJ Syst Biol Appl· August 2016

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Drug-induced adverse events prediction with the LINCS L1000 data.
Zichen Wang, Neil R Clark, Avi Ma'ayan

Bioinformatics· August 2016

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Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production.
David J Morgan, Toryn M Poolman, Andrew J K Williamson, Zichen Wang, Neil R Clark

Sci Rep· May 2016

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The first definitive Middle Jurassic atoposaurid (Crocodylomorpha, Neosuchia), and a discussion on the genus .
Mark T Young, Jonathan P Tennant, Stephen L Brusatte, Thomas J Challands, Nicholas C Fraser, Neil D L Clark

Zool J Linn Soc· February 2016

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Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool.
Neil R Clark, Maciej Szymkiewicz, Zichen Wang, Caroline D Monteiro, Matthew R Jones

Proceedings (IEEE Int Conf Bioinformatics Biomed)· November 2015

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Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin complex reveals multiple functions within the podocyte.
Thomas Hays, Avi Ma'ayan, Neil R Clark, Christopher M Tan, Avelino Teixeira

PLoS One· October 2015

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Dynamics of the discovery process of protein-protein interactions from low content studies.
Zichen Wang, Neil R Clark, Avi Ma'ayan

BMC Syst Biol· June 2015

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Scaffold hopping approach on the route to selective tankyrase inhibitors.
Paride Liscio, Andrea Carotti, Stefania Asciutti, Martina Ferri, Maira M Pires, Neil R Clark

Eur J Med Chem· November 2014

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Lean Big Data integration in systems biology and systems pharmacology.
Avi Ma'ayan, Andrew D Rouillard, Neil R Clark, Zichen Wang, Qiaonan Duan

Trends Pharmacol Sci· September 2014

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The characteristic direction: a geometrical approach to identify differentially expressed genes.
Neil R Clark, Kevin S Hu, Axel S Feldmann, Yan Kou, Edward Y Chen

BMC Bioinformatics· March 2014

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Network2Canvas: network visualization on a canvas with enrichment analysis.
Christopher M Tan, Edward Y Chen, Ruth Dannenfelser, Neil R Clark, Avi Ma'ayan

Bioinformatics· August 2013

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Induction of a hemogenic program in mouse fibroblasts.
Carlos-Filipe Pereira, Betty Chang, Jiajing Qiu, Xiaohong Niu, Dmitri Papatsenko, Neil R Clark

Cell Stem Cell· August 2013

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Renoprotective effect of combined inhibition of angiotensin-converting enzyme and histone deacetylase.
Yifei Zhong, Edward Y Chen, Ruijie Liu, Peter Y Chuang, Sandeep K Mallipattu, Neil R Clark

J Am Soc Nephrol· April 2013

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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.
Edward Y Chen, Christopher M Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Neil R Clark

BMC Bioinformatics· April 2013

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Sets2Networks: network inference from repeated observations of sets.
Neil R Clark, Ruth Dannenfelser, Christopher M Tan, Michael E Komosinski, Avi Ma'ayan

BMC Syst Biol· July 2012

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