Publications by authors named "Nicholas Bergman"

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Adeno-associated virus type 2 in US children with acute severe hepatitis.
Venice Servellita, Alicia Sotomayor Gonzalez, Daryl M Lamson, Abiodun Foresythe, Hee Jae Huh, Nicholas H Bergman

Nature· May 2023

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Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2.
Jon Arizti-Sanz, Catherine A Freije, Alexandra C Stanton, Brittany A Petros, Chloe K Boehm, Nicholas H Bergman

Nat Commun· November 2020

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Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2.
Jon Arizti-Sanz, Catherine A Freije, Alexandra C Stanton, Chloe K Boehm, Brittany A Petros, Nicholas H Bergman

bioRxiv· May 2020

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Draft Genome Sequences of Five Historical Bacillus anthracis Strains.
Daniel D Sommer, Shashikala Ratnayake, Diana Radune, Kisha Parker, Sana Enke, Nicholas H Bergman

Microbiol Resour Announc· January 2020

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The Brief Case: A Fatal Case of Necrotizing Fasciitis Due to Multidrug-Resistant Acinetobacter baumannii.
Lindsey Matthews, Jennifer S Goodrich, David J Weber, Nicholas H Bergman, Melissa B Miller

J Clin Microbiol· July 2019

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Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
Jacquelyn S Meisel, Daniel J Nasko, Brian Brubach, Victoria Cepeda-Espinoza, Jessica Chopyk, Nicholas H Bergman

Microbiome· November 2018

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Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation.
Jason R Miller, Sergey Koren, Kari A Dilley, Vinita Puri, David M Brown, Nicholas H Bergman

Gigascience· March 2018

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Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens.
Odile Loreille, Shashikala Ratnayake, Adam L Bazinet, Timothy B Stockwell, Daniel D Sommer, Nicholas H Bergman

Genes (Basel)· March 2018

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Draft Genome Sequences from a Novel Clade of Strains, Isolated from the International Space Station.
Kasthuri Venkateswaran, Aleksandra Checinska Sielaff, Shashikala Ratnayake, Robert K Pope, Thomas E Blank, Nicholas H Bergman

Genome Announc· August 2017

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Non-Toxin-Producing Strains Belonging to the Clade Isolated from the International Space Station.
Kasthuri Venkateswaran, Nitin K Singh, Aleksandra Checinska Sielaff, Robert K Pope, Nicholas H Bergman

mSystems· June 2017

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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman

Genome Res· May 2017

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Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes.
Andrew Brantley Hall, Philippos-Aris Papathanos, Atashi Sharma, Changde Cheng, Omar S Akbari, Nicholas H Bergman

Proc Natl Acad Sci U S A· April 2016

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Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru.
Todd J Treangen, George Schoeler, Adam M Phillippy, Nicholas H Bergman, Michael J Turell

PLoS Negl Trop Dis· April 2016

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Reducing assembly complexity of microbial genomes with single-molecule sequencing.
Sergey Koren, Gregory P Harhay, Timothy P L Smith, James L Bono, Dayna M Harhay, Nicholas H Bergman

Genome Biol· January 2015

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Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923.
Todd J Treangen, Rosslyn A Maybank, Sana Enke, Mary Beth Friss, Lynn F Diviak, Nicholas H Bergman

Genome Announc· November 2014

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Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.
Jens H Kuhn, Kristian G Andersen, Yīmíng Bào, Sina Bavari, Stephan Becker, Nicholas H Bergman

Viruses· September 2014

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Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution.
Gang Fang, Karla D Passalacqua, Jason Hocking, Paula Montero Llopis, Mark Gerstein, Nicholas H Bergman

BMC Genomics· July 2013

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Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis.
Karla D Passalacqua, Anjana Varadarajan, Charlotte Weist, Brian D Ondov, Benjamin Byrd, Nicholas H Bergman

PLoS One· April 2013

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Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis.
Robin Harrington, Brian D Ondov, Diana Radune, Mary Beth Friss, Joy Klubnik, Nicholas H Bergman

Genome Announc· January 2013

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Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe.
Erin P Price, Meagan L Seymour, Derek S Sarovich, Jennie Latham, Spenser R Wolken, Nicholas H Bergman

Emerg Infect Dis· August 2012

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Interactive metagenomic visualization in a Web browser.
Brian D Ondov, Nicholas H Bergman, Adam M Phillippy

BMC Bioinformatics· September 2011

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Genomic fluidity: an integrative view of gene diversity within microbial populations.
Andrey O Kislyuk, Bart Haegeman, Nicholas H Bergman, Joshua S Weitz

BMC Genomics· January 2011

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An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.
Brian D Ondov, Charles Cochran, Mark Landers, Gavin D Meredith, Miroslav Dudas, Nicholas H Bergman

Bioinformatics· August 2010

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Bacillus anthracis genome organization in light of whole transcriptome sequencing.
Jeffrey Martin, Wenhan Zhu, Karla D Passalacqua, Nicholas Bergman, Mark Borodovsky

BMC Bioinformatics· April 2010

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