Publications by authors named "Nihar Sheth"

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Preliminary Evaluation of a Novel Neural Network-Based Hybrid Simulator for Surgical Training and Performance Assessment of Neonatal Thoracentesis.
Nihar N Sheth, Nishant Srinivasan, Saurabhkumar Patel, Cristian J Luciano

Simul Healthc· August 2023

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The vaginal microbiome and preterm birth.
Jennifer M Fettweis, Myrna G Serrano, J Paul Brooks, David J Edwards, Philippe H Girerd, Nihar U Sheth

Nat Med· June 2019

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Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy.
Myrna G Serrano, Hardik I Parikh, J Paul Brooks, David J Edwards, Tom J Arodz, Nihar U Sheth

Nat Med· June 2019

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Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice.
Megan A O'Brien, Rory M Weston, Nihar U Sheth, Steven Bradley, John Bigbee

Front Genet· September 2018

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Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation.
Vishal Koparde, Badar Abdul Razzaq, Tara Suntum, Roy Sabo, Allison Scalora, Nihar Sheth

PLoS One· December 2017

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Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity.
Abdallah A Abdelmaksoud, Philippe H Girerd, Erin M Garcia, J Paul Brooks, Lauren M Leftwich, Nihar U Sheth

PLoS One· October 2017

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Rare mutations and potentially damaging missense variants in genes encoding fibrillar collagens and proteins involved in their production are candidates for risk for preterm premature rupture of membranes.
Bhavi P Modi, Maria E Teves, Laurel N Pearson, Hardik I Parikh, Piya Chaemsaithong, Nihar U Sheth

PLoS One· August 2017

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Effects of combined oral contraceptives, depot medroxyprogesterone acetate and the levonorgestrel-releasing intrauterine system on the vaginal microbiome.
J Paul Brooks, David J Edwards, Diana L Blithe, Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth

Contraception· April 2017

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MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.
Hardik I Parikh, Vishal N Koparde, Steven P Bradley, Gregory A Buck, Nihar U Sheth

BMC Bioinformatics· December 2016

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Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential in HLA-Matched and -Mismatched Donor-Recipient Pairs.
Badar Abdul Razzaq, Allison Scalora, Vishal N Koparde, Jeremy Meier, Musa Mahmood, Nihar Sheth

Biol Blood Marrow Transplant· May 2016

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Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.
Abdallah A Abdelmaksoud, Vishal N Koparde, Nihar U Sheth, Myrna G Serrano, Abigail L Glascock

Microbiology (Reading)· March 2016

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Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome.
Karen D Hendricks-Muñoz, Jie Xu, Hardik I Parikh, Ping Xu, Jennifer M Fettweis, Nihar U Sheth

Am J Perinatol· November 2015

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An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.
Jennifer M Fettweis, Myrna G Serrano, Bernice Huang, J Paul Brooks, Abigail L Glascock, Nihar U Sheth

PLoS One· July 2015

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The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.
J Paul Brooks, David J Edwards, Michael D Harwich, Maria C Rivera, Jennifer M Fettweis, Nihar U Sheth

BMC Microbiol· March 2015

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Stem cell transplantation as a dynamical system: are clinical outcomes deterministic?
Amir A Toor, Jared D Kobulnicky, Salman Salman, Catherine H Roberts, Max Jameson-Lee, Nihar Sheth

Front Immunol· December 2014

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In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation.
Max Jameson-Lee, Vishal Koparde, Phil Griffith, Allison F Scalora, Juliana K Sampson, Nihar U Sheth

Front Immunol· November 2014

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Differences in vaginal microbiome in African American women versus women of European ancestry.
Jennifer M Fettweis, J Paul Brooks, Myrna G Serrano, Nihar U Sheth, Philippe H Girerd

Microbiology (Reading)· October 2014

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BOTUX: bayesian-like operational taxonomic unit examiner.
Vishal N Koparde, Ricky S Adkins, Jennifer M Fettweis, Myrna G Serrano, Gregory A A Buck, Nihar U Sheth

Int J Comput Biol Drug Des· September 2014

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Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation.
Juliana K Sampson, Nihar U Sheth, Vishal N Koparde, Allison F Scalora, Myrna G Serrano

Br J Haematol· August 2014

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Species-level classification of the vaginal microbiome.
Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth, Carly M Mayer, Abigail L Glascock

BMC Genomics· June 2013

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Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.
John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth

PLoS One· December 2012

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Putative cis-regulatory elements associated with heat shock genes activated during excystation of Cryptosporidium parvum.
Benjamin Cohn, Patricio Manque, Ana M Lara, Myrna Serrano, Nihar Sheth

PLoS One· March 2010

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Comprehensive splice-site analysis using comparative genomics.
Nihar Sheth, Xavier Roca, Michelle L Hastings, Ted Roeder, Adrian R Krainer

Nucleic Acids Res· September 2006

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Second-generation shRNA libraries covering the mouse and human genomes.
Jose M Silva, Mamie Z Li, Ken Chang, Wei Ge, Michael C Golding, Nihar Sheth

Nat Genet· November 2005

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Cloning of short hairpin RNAs for gene knockdown in mammalian cells.
Patrick J Paddison, Michele Cleary, Jose Maria Silva, Kenneth Chang, Nihar Sheth

Nat Methods· November 2004

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