Publications by authors named "Patrick Stumpf"

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Isolation, Differentiation, and Characterization of Human Bone Marrow Stromal Stem Cells In Vitro and In Vivo.
Janos Kanczler, Rahul S Tare, Howard C Tribe, Patrick Stumpf, Andrew Rawlings

Methods Mol Biol· May 2025

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POT1a deficiency in mesenchymal niches perturbs B-lymphopoiesis.
Kentaro Nakashima, Yuya Kunisaki, Kentaro Hosokawa, Kazuhito Gotoh, Hisayuki Yao, Patrick S Stumpf

Commun Biol· September 2023

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FOXG1 targets BMP repressors and cell cycle inhibitors in human neural progenitor cells.
Nuwan C Hettige, Peter Fleming, Amelia Semenak, Xin Zhang, Huashan Peng, Patrick S Stumpf

Hum Mol Genet· July 2023

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Single-cell RNA-sequence analysis of human bone marrow reveals new targets for isolation of skeletal stem cells using spherical nucleic acids.
Elloise Z Matthews, Stuart Lanham, Kate White, Maria-Eleni Kyriazi, Konstantina Alexaki, Patrick S Stumpf

J Tissue Eng· May 2023

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Kabuki syndrome stem cell models reveal locus specificity of histone methyltransferase 2D (KMT2D/MLL4).
Malvin Jefri, Xin Zhang, Patrick S Stumpf, Li Zhang, Huashan Peng

Hum Mol Genet· October 2022

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An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans Cells.
James Davies, Andres F Vallejo, Sofia Sirvent, Gemma Porter, Kalum Clayton, Patrick Stumpf

Front Immunol· October 2021

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Dual dean entrainment with volume ratio modulation for efficient droplet co-encapsulation: extreme single-cell indexing.
Jack Harrington, Luis Blay Esteban, Jonathan Butement, Andres F Vallejo, Simon I R Lane, Patrick S Stumpf

Lab Chip· September 2021

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Lesch-Nyhan disease causes impaired energy metabolism and reduced developmental potential in midbrain dopaminergic cells.
Scott Bell, Vincent McCarty, Huashan Peng, Malvin Jefri, Nuwan Hettige, Patrick S Stumpf

Stem Cell Reports· July 2021

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Modeling Stem Cell Fates using Non-Markov Processes.
Patrick S Stumpf, Fumio Arai, Ben D MacArthur

Cell Stem Cell· February 2021

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Single-cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from human PSCs.
Antonella Fidanza, Patrick S Stumpf, Prakash Ramachandran, Sara Tamagno, Ann Babtie

Blood· December 2020

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Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing.
Patrick S Stumpf, Xin Du, Haruka Imanishi, Yuya Kunisaki, Yuichiro Semba

Commun Biol· December 2020

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Machine Learning of Hematopoietic Stem Cell Divisions from Paired Daughter Cell Expression Profiles Reveals Effects of Aging on Self-Renewal.
Fumio Arai, Patrick S Stumpf, Yoshiko M Ikushima, Kentaro Hosokawa, Aline Roch

Cell Syst· December 2020

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Heterogeneity and 'memory' in stem cell populations.
Patrick S Stumpf, Fumio Arai, Ben D MacArthur

Phys Biol· November 2020

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Theory of cell fate.
Michael J Casey, Patrick S Stumpf, Ben D MacArthur

Wiley Interdiscip Rev Syst Biol Med· March 2020

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Genomic programming of IRF4-expressing human Langerhans cells.
Sofia Sirvent, Andres F Vallejo, James Davies, Kalum Clayton, Zhiguo Wu, Patrick Stumpf

Nat Commun· January 2020

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Isolation, Differentiation, and Characterization of Human Bone Marrow Stem Cells In Vitro and In Vivo.
Janos Kanczler, Rahul S Tare, Patrick Stumpf, Timothy J Noble, Cameron Black

Methods Mol Biol· June 2019

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Machine Learning of Stem Cell Identities From Single-Cell Expression Data via Regulatory Network Archetypes.
Patrick S Stumpf, Ben D MacArthur

Front Genet· January 2019

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Thrombopoietin Metabolically Primes Hematopoietic Stem Cells to Megakaryocyte-Lineage Differentiation.
Ayako Nakamura-Ishizu, Takayoshi Matsumura, Patrick S Stumpf, Terumasa Umemoto, Hitoshi Takizawa

Cell Rep· November 2018

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Stem Cell Differentiation as a Non-Markov Stochastic Process.
Patrick S Stumpf, Rosanna C G Smith, Michael Lenz, Andreas Schuppert, Franz-Josef Müller, Michael P H Stumpf

Cell Syst· September 2017

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Nanog Fluctuations in Embryonic Stem Cells Highlight the Problem of Measurement in Cell Biology.
Rosanna C G Smith, Patrick S Stumpf, Sonya J Ridden, Aaron Sim, Sarah Filippi

Biophys J· June 2017

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Single-cell pluripotency regulatory networks.
Patrick S Stumpf, Rob Ewing, Ben D MacArthur

Proteomics· September 2016

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Quantification of intracellular payload release from polymersome nanoparticles.
Edoardo Scarpa, Joanne L Bailey, Agnieszka A Janeczek, Patrick S Stumpf, Alexander H Johnston

Sci Rep· July 2016

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MicroRNA-146a regulates human foetal femur derived skeletal stem cell differentiation by down-regulating SMAD2 and SMAD3.
Kelvin S C Cheung, Nunzia Sposito, Patrick S Stumpf, David I Wilson, Tilman Sanchez-Elsner

PLoS One· January 2015

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Visualization and clustering of high-dimensional transcriptome data using GATE.
Patrick S Stumpf, Ben D MacArthur

Methods Mol Biol· November 2014

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Iron oxide nanoparticles stabilized with dendritic polyglycerols as selective MRI contrast agents.
Daniel Nordmeyer, Patrick Stumpf, Dominic Gröger, Andreas Hofmann, Sven Enders

Nanoscale· August 2014

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