Publications by authors named "Pazit Polak"

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The current landscape of adaptive immune receptor genomic and repertoire data: OGRDB and VDJbase.
William D Lees, Ayelet Peres, Vered Klein, Naama Amos, Uddalok Jana, Pazit Polak

Nucleic Acids Res· November 2025

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Enhancing sequence alignment of adaptive immune receptors through multi-task deep learning.
Thomas Konstantinovsky, Ayelet Peres, Ran Eisenberg, Pazit Polak, Ofir Lindenbaum

Nucleic Acids Res· July 2025

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A Broad Survey and Functional Analysis of Immunoglobulin Loci Variation in Rhesus Macaques.
Ayelet Peres, Amit A Upadhyay, Vered Hana Klein, Swati Saha, Oscar L Rodriguez, Pazit Polak

bioRxiv· March 2025

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An unbiased comparison of immunoglobulin sequence aligners.
Thomas Konstantinovsky, Ayelet Peres, Pazit Polak, Gur Yaari

Brief Bioinform· September 2024

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Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data.
Ayelet Peres, Vered Klein, Boaz Frankel, William Lees, Pazit Polak

Brief Bioinform· March 2024

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IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
Ayelet Peres, William D Lees, Oscar L Rodriguez, Noah Y Lee, Pazit Polak

Nucleic Acids Res· September 2023

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Altered somatic hypermutation patterns in COVID-19 patients classifies disease severity.
Modi Safra, Zvi Tamari, Pazit Polak, Shachaf Shiber, Moshe Matan

Front Immunol· May 2023

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A somatic hypermutation-based machine learning model stratifies individuals with Crohn's disease and controls.
Modi Safra, Lael Werner, Ayelet Peres, Pazit Polak, Naomi Salamon

Genome Res· January 2023

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Ontogeny of the B Cell Receptor Repertoire and Microbiome in Mice.
Amit Gilboa, Ronen Hope, Shira Ben Simon, Pazit Polak, Omry Koren

J Immunol· June 2022

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T cell receptor beta germline variability is revealed by inference from repertoire data.
Aviv Omer, Ayelet Peres, Oscar L Rodriguez, Corey T Watson, William Lees, Pazit Polak

Genome Med· January 2022

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Immune2vec: Embedding B/T Cell Receptor Sequences in ℝ Using Natural Language Processing.
Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, Gur Yaari

Front Immunol· October 2021

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Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls.
Or Shemesh, Pazit Polak, Knut E A Lundin, Ludvig M Sollid, Gur Yaari

Front Immunol· September 2021

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VDJbase: an adaptive immune receptor genotype and haplotype database.
Aviv Omer, Or Shemesh, Ayelet Peres, Pazit Polak, Adrian J Shepherd

Nucleic Acids Res· January 2020

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RAbHIT: R Antibody Haplotype Inference Tool.
Ayelet Peres, Moriah Gidoni, Pazit Polak, Gur Yaari

Bioinformatics· November 2019

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Antibody Repertoire Analysis of Hepatitis C Virus Infections Identifies Immune Signatures Associated With Spontaneous Clearance.
Sivan Eliyahu, Oz Sharabi, Shiri Elmedvi, Reut Timor, Ateret Davidovich, Pazit Polak

Front Immunol· October 2019

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Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping.
Moriah Gidoni, Omri Snir, Ayelet Peres, Pazit Polak, Ida Lindeman

Nat Commun· February 2019

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Selective inactivation of enzymes conjugated to nanoparticles using tuned laser illumination.
Asaf Ilovitsh, Pazit Polak, Zeev Zalevsky, Orit Shefi

Cytometry A· August 2017

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Nanometric agents in the service of neuroscience: Manipulation of neuronal growth and activity using nanoparticles.
Pazit Polak, Orit Shefi

Nanomedicine· August 2015

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Novel role for retinol-binding protein 4 in the regulation of blood pressure.
Bettina J Kraus, Juliano L Sartoretto, Pazit Polak, Tetsuya Hosooka, Takashi Shiroto

FASEB J· August 2015

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Gold nanoparticles-based biosensing of single nucleotide DNA mutations.
Pazit Polak, Zeev Zalevsky, Orit Shefi

Int J Biol Macromol· August 2013

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The synergistic effect of visible light and gentamycin on Pseudomona aeruginosa microorganisms.
Yana Reznick, Ehud Banin, Anat Lipovsky, Rachel Lubart, Pazit Polak

J Vis Exp· July 2013

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Thermal degradation of DNA.
Moshe Karni, Dolev Zidon, Pazit Polak, Zeev Zalevsky, Orit Shefi

DNA Cell Biol· June 2013

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Hepatic mTORC2 activates glycolysis and lipogenesis through Akt, glucokinase, and SREBP1c.
Asami Hagiwara, Marion Cornu, Nadine Cybulski, Pazit Polak, Charles Betz

Cell Metab· May 2012

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mTOR complex 2 in adipose tissue negatively controls whole-body growth.
Nadine Cybulski, Pazit Polak, Johan Auwerx, Markus A Rüegg, Michael N Hall

Proc Natl Acad Sci U S A· June 2009

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mTOR and the control of whole body metabolism.
Pazit Polak, Michael N Hall

Curr Opin Cell Biol· April 2009

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