Publications by authors named "Peter D Vize"

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Xenbase: 25 years of integrating molecular and biomedical data from Xenopus.
Stanley Chu, Andrew J Bell, Vaneet Lotay, Ngoc Ly, Troy J Pells, Peter D Vize

Genetics· November 2025

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Whole Genome Sequencing Reveals Genetic Differences Between Symbiodiniaceae Populations Among Reproductively and Geographically Isolated Colonies in Western Australia.
Sanna Y Eriksson, Mikhail V Matz, Peter D Vize, Natalie L Rosser

Ecol Evol· January 2025

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Echinobase: a resource to support the echinoderm research community.
Cheryl A Telmer, Kamran Karimi, Macie M Chess, Sergei Agalakov, Bradley I Arshinoff, Peter D Vize

Genetics· May 2024

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Xenbase: key features and resources of the Xenopus model organism knowledgebase.
Malcolm Fisher, Christina James-Zorn, Virgilio Ponferrada, Andrew J Bell, Nivitha Sundararaj, Peter D Vize

Genetics· May 2023

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The case for standardizing gene nomenclature in vertebrates.
Fiona M McCarthy, Tamsin E M Jones, Anne E Kwitek, Cynthia L Smith, Peter D Vize

Nature· February 2023

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A beautiful, complex simplicity: the origins of nephron segmentation uncovered by single-cell sequencing of the pronephros.
Peter D Vize

Kidney Int· January 2023

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Normal Table of Xenopus development: a new graphical resource.
Natalya Zahn, Christina James-Zorn, Virgilio G Ponferrada, Dany S Adams, Julia Grzymkowski, Peter D Vize

Development· July 2022

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Embryonic and aglomerular kidney development in the bay pipefish, Syngnathus leptorhynchus.
Bianca R Maters, Emily Stevenson, Peter D Vize

PLoS One· May 2022

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The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.
Malcolm E Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J Nenni, Joshua D Fortriede, Peter D Vize

BMC Bioinformatics· March 2022

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Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.
Bradley I Arshinoff, Gregory A Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Peter D Vize

Nucleic Acids Res· January 2022

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Classifying domain-specific text documents containing ambiguous keywords.
Kamran Karimi, Sergei Agalakov, Cheryl A Telmer, Thomas R Beatman, Troy J Pells, Peter D Vize

Database (Oxford)· September 2021

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Integration of 1:1 orthology maps and updated datasets into Echinobase.
Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D Vize

Database (Oxford)· May 2021

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Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.
Joshua D Fortriede, Troy J Pells, Stanley Chu, Praneet Chaturvedi, DongZhuo Wang, Peter D Vize

Nucleic Acids Res· January 2020

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Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral.
Daniel M Wuitchik, DongZhuo Wang, Troy J Pells, Kamran Karimi, Selina Ward, Peter D Vize

Mol Ecol· August 2019

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Xenbase: Facilitating the Use of to Model Human Disease.
Mardi J Nenni, Malcolm E Fisher, Christina James-Zorn, Troy J Pells, Virgilio Ponferrada, Peter D Vize

Front Physiol· February 2019

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Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
Christina James-Zorn, Virgilio Ponferrada, Malcolm E Fisher, Kevin Burns, Joshua Fortriede, Peter D Vize

Methods Mol Biol· January 2019

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De novo assembly and annotation of the Acropora gemmifera transcriptome.
Matthew J Oldach, Peter D Vize

Mar Genomics· July 2018

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Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences.
Kamran Karimi, Daniel M Wuitchik, Matthew J Oldach, Peter D Vize

Evol Bioinform Online· July 2018

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Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Kamran Karimi, Joshua D Fortriede, Vaneet S Lotay, Kevin A Burns, Dong Zhou Wang, Peter D Vize

Nucleic Acids Res· January 2018

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Xenopus genomic data and browser resources.
Peter D Vize, Aaron M Zorn

Dev Biol· June 2017

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Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.
Matthew J Oldach, Matthew Workentine, Mikhail V Matz, Tung-Yung Fan, Peter D Vize

Mol Ecol· May 2017

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Genome evolution in the allotetraploid frog Xenopus laevis.
Adam M Session, Yoshinobu Uno, Taejoon Kwon, Jarrod A Chapman, Atsushi Toyoda, Peter D Vize

Nature· October 2016

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Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora.
Aisling K Brady, Bette L Willis, Lawrence D Harder, Peter D Vize

Biol Bull· April 2016

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Xenbase: Core features, data acquisition, and data processing.
Christina James-Zorn, Virgillio G Ponferrada, Kevin A Burns, Joshua D Fortriede, Vaneet S Lotay, Peter D Vize

Genesis· August 2015

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Model organism databases.
Peter D Vize, Monte Westerfield

Genesis· August 2015

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