Publications by authors named "Refugio Robles-Sikisaka"

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Cryptic spread of SARS-CoV-2 undermined targeted travel restrictions.
Praneeth Gangavarapu, Jassim Mohammed Abdo, Edyth Parker, Mark Zeller, Refugio Robles-Sikisaka

medRxiv· September 2025

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Enterovirus C recombination groups: RNA sequence similarity and the viral polymerase underpin sexual replication mechanisms.
Evan M Okolovitch, Vishnu Govindarajan, Refugio Robles-Sikisaka, Grace Campagnola, Brian J Kempf

J Virol· July 2025

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Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever.
Dylan Kotliar, Siddharth Raju, Shervin Tabrizi, Ikponmwosa Odia, Augustine Goba, Refugio Robles-Sikisaka

Nat Microbiol· March 2024

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Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.
Nathaniel L Matteson, Gabriel W Hassler, Ezra Kurzban, Madison A Schwab, Sarah A Perkins, Refugio Robles-Sikisaka

Cell· December 2023

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Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Refugio Robles-Sikisaka

Nature· September 2022

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Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions.
Edyth Parker, Catelyn Anderson, Mark Zeller, Ahmad Tibi, Jennifer L Havens, Refugio Robles-Sikisaka

Nat Commun· August 2022

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Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.
Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Refugio Robles-Sikisaka

medRxiv· April 2022

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Emergence of an early SARS-CoV-2 epidemic in the United States.
Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Refugio Robles-Sikisaka

Cell· September 2021

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Zika Virus Non-Structural Protein 1 Antigen-Capture Immunoassay.
Brandon J Beddingfield, Jessica N Hartnett, Russell B Wilson, Peter C Kulakosky, Kristian G Andersen, Refugio Robles-Sikisaka

Viruses· September 2021

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Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.
Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Refugio Robles-Sikisaka

Cell· May 2021

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Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.
Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Refugio Robles-Sikisaka

medRxiv· February 2021

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Emergence of an early SARS-CoV-2 epidemic in the United States.
Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Refugio Robles-Sikisaka

medRxiv· February 2021

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Identification of Common CD8 T Cell Epitopes from Lassa Fever Survivors in Nigeria and Sierra Leone.
Saori Sakabe, Jessica N Hartnett, Nhi Ngo, Augustine Goba, Mambu Momoh, Refugio Robles-Sikisaka

J Virol· June 2020

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High crossreactivity of human T cell responses between Lassa virus lineages.
Brian M Sullivan, Saori Sakabe, Jessica N Hartnett, Nhi Ngo, Augustine Goba, Refugio Robles-Sikisaka

PLoS Pathog· March 2020

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Analysis of CD8 T cell response during the 2013-2016 Ebola epidemic in West Africa.
Saori Sakabe, Brian M Sullivan, Jessica N Hartnett, Refugio Robles-Sikisaka, Karthik Gangavarapu

Proc Natl Acad Sci U S A· August 2018

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Genomic epidemiology reveals multiple introductions of Zika virus into the United States.
Nathan D Grubaugh, Jason T Ladner, Moritz U G Kraemer, Gytis Dudas, Amanda L Tan, Refugio Robles-Sikisaka

Nature· June 2017

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Zika virus evolution and spread in the Americas.
Hayden C Metsky, Christian B Matranga, Shirlee Wohl, Stephen F Schaffner, Catherine A Freije, Refugio Robles-Sikisaka

Nature· June 2017

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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.
Joshua Quick, Nathan D Grubaugh, Steven T Pullan, Ingra M Claro, Andrew D Smith, Refugio Robles-Sikisaka

Nat Protoc· June 2017

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Biology, genome organization, and evolution of parvoviruses in marine shrimp.
Arun K Dhar, Refugio Robles-Sikisaka, Vanvimon Saksmerprome, Dilip K Lakshman

Adv Virus Res· December 2014

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Human oral viruses are personal, persistent and gender-consistent.
Shira R Abeles, Refugio Robles-Sikisaka, Melissa Ly, Andrew G Lum, Julia Salzman

ISME J· September 2014

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Conservation of streptococcal CRISPRs on human skin and saliva.
Refugio Robles-Sikisaka, Mayuri Naidu, Melissa Ly, Julia Salzman, Shira R Abeles

BMC Microbiol· June 2014

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Characterization of bacteriophage communities and CRISPR profiles from dental plaque.
Mayuri Naidu, Refugio Robles-Sikisaka, Shira R Abeles, Tobias K Boehm, David T Pride

BMC Microbiol· June 2014

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Altered oral viral ecology in association with periodontal disease.
Melissa Ly, Shira R Abeles, Tobias K Boehm, Refugio Robles-Sikisaka, Mayuri Naidu

mBio· May 2014

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Association between living environment and human oral viral ecology.
Refugio Robles-Sikisaka, Melissa Ly, Tobias Boehm, Mayuri Naidu, Julia Salzman

ISME J· September 2013

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Evidence of recombination and positive selection in cetacean papillomaviruses.
Refugio Robles-Sikisaka, Rebecca Rivera, Hendrik H Nollens, Judy St Leger, Wendy N Durden

Virology· June 2012

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