Publications by authors named "Rob Willems"

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upregulates the immune inhibitory receptor in colorectal cancer cells via the activation of ALPK1.
Coco Duizer, Moniek Salomons, Merel van Gogh, Sanne Gräve, Freke A Schaafsma, Rob J L Willems

Gut Microbes· December 2025

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Nasopharyngeal microbiome composition by SARS-CoV-2 presence and severity.
Juana Claus, Janetta Top, Fernanda L Paganelli, Thijs Ten Doesschate, Nienke Paternotte, Rob J L Willems

Sci Rep· July 2025

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Development and temporal evaluation of sex-specific models to predict 4-year atherosclerotic cardiovascular disease risk based on age and neighbourhood characteristics in South Limburg, the Netherlands.
Anke Bruninx, Lianne Ippel, Rob Willems, Andre Dekker, Iñigo Bermejo

Diagn Progn Res· July 2025

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Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria.
Carlos Serna, Bosco R Matamoros, Mario Pulido-Vadillo, Jose F Delgado-Blas, Rogier R Jansen, Rob J L Willems

Nat Commun· July 2025

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Gut microbial dysbiosis, IgA, and Enterococcus in common variable immunodeficiency with immune dysregulation.
Roos-Marijn Berbers, Fernanda L Paganelli, Joris M van Montfrans, Pauline M Ellerbroek, Marco C Viveen, Rob J L Willems

Microbiome· January 2025

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Dissemination of IncQ1 Plasmids Harboring NTE-IId in a Brazilian Hospital.
Camila Maria Dos Santos Boralli, Julian Andres Paganini, Rodrigo Silva Meneses, Camila Pacheco Silveira Martins da Mata, Edna Marilea Meireles Leite, Rob J L Willems

Microorganisms· January 2025

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Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.
Harry A Thorpe, Maiju Pesonen, Marta Corbella, Henri Pesonen, Stefano Gaiarsa, Rob J L Willems

Lancet Microbe· October 2024

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Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs.
Juri Kuronen, Samuel T Horsfield, Anna K Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Rob J L Willems

Genome Res· August 2024

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Colonization of vancomycin-resistant in human-derived colonic epithelium: unraveling the transcriptional dynamics of host-enterococcal interactions.
Paul B Stege, Jeffrey M Beekman, Antoni P A Hendrickx, Laura van Eijk, Malbert R C Rogers, Rob J L Willems

FEMS Microbes· May 2024

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YajC, a predicted membrane protein, promotes biofilm formation and in a rat endocarditis model.
Janetta Top, Xinglin Zhang, Antoni P A Hendrickx, Sjef Boeren, Willem van Schaik, Rob J L Willems

FEMS Microbes· May 2024

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PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in .
Julian A Paganini, Jesse J Kerkvliet, Lisa Vader, Nienke L Plantinga, Rodrigo Meneses, Rob J L Willems

Microb Genom· February 2024

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Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements.
Jesse J Kerkvliet, Alex Bossers, Jannigje G Kers, Rodrigo Meneses, Rob Willems

PeerJ· January 2024

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The population-level impact of genetics on intestinal colonization and extraintestinal infection.
Chrispin Chaguza, Anna K Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Ana R Freitas, Rob J L Willems

Microbiol Spectr· December 2023

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Gut microbiome dynamics in index patients colonized with extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales after hospital discharge and their household contacts.
Janetta Top, Tess D Verschuuren, Marco C Viveen, M Eugenia Riccio, Stephan Harbarth, Rob J L Willems

Microbiol Spectr· December 2023

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Unraveling susceptibility to quaternary ammonium compounds: genes, phenotypes, and the impact of environmental conditions.
Ana P Pereira, Patrícia Antunes, Paula Bierge, Rob J L Willems, Jukka Corander

Microbiol Spectr· September 2023

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Gut Colonization by ESBL-Producing Escherichia coli in Dogs Is Associated with a Distinct Microbiome and Resistome Composition.
Paul B Stege, Joost Hordijk, Arnar K S Sandholt, Aldert L Zomer, Marco C Viveen, Rob J L Willems

Microbiol Spectr· August 2023

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Characterization of and Plasmids of a ST11 Outbreak Clone.
Camila Maria Dos Santos Boralli, Julian Andres Paganini, Rodrigo Silva Meneses, Camila Pacheco Silveira Martins da Mata, Edna Marilea Meireles Leite, Rob J L Willems

Antibiotics (Basel)· May 2023

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Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids.
Andreia Rebelo, Bárbara Duarte, Carolina Ferreira, Joana Mourão, Sofia Ribeiro, Rob Willems

Int J Food Microbiol· January 2023

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Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits.
Sudarshan A Shetty, Paul B Stege, Joost Hordijk, Esther Gijsbers, Cindy M Dierikx, Rob J L Willems

mSphere· December 2022

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External validation of WGS-based antimicrobial susceptibility prediction tools, KOVER-AMR and ResFinder 4.1, for Escherichia coli clinical isolates.
Tess Verschuuren, Thijs Bosch, Valentina Mascaro, Rob Willems, Jan Kluytmans

Clin Microbiol Infect· November 2022

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Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans.
Ana P Pereira, Patrícia Antunes, Rob Willems, Jukka Corander, Teresa M Coque

Microbiol Spectr· August 2022

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Impact of long-term dietary habits on the human gut resistome in the Dutch population.
Paul B Stege, Joost Hordijk, Sudarshan A Shetty, Michael Visser, Marco C Viveen, Rob J L Willems

Sci Rep· February 2022

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The interplay between community and hospital clones within health-care settings: a genomic analysis.
Sebastiaan J van Hal, Rob J L Willems, Theodore Gouliouris, Susan A Ballard, Teresa M Coque

Lancet Microbe· February 2022

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Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial.
Marta Reyman, Marlies A van Houten, Rebecca L Watson, Mei Ling J N Chu, Kayleigh Arp, Rob J L Willems

Nat Commun· February 2022

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Functional characterization of a gene cluster responsible for inositol catabolism associated with hospital-adapted isolates of .
Janetta Top, Jery Baan, Adinda Bisschop, Sergio Arredondo-Alonso, Willem van Schaik, Rob J L Willems

Microbiology (Reading)· September 2021

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