Publications by authors named "Sudarshan A Shetty"

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DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study.
Saba Anwar, Matthew Lamaudiere, Jack Hassall, Jacob Dehinsilu, Ravneet K Bhuller, Sudarshan A Shetty

mSystems· November 2025

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Pre-Vaccination Immunotypes and Immune Entropy Are Indicators of Multiple Vaccine Responsiveness.
Alper Cevirgel, Marieke van der Heiden, Sudarshan A Shetty, Markus Viljanen, Martijn Vos

Aging Cell· September 2025

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Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis.
Tyler Myers, Se Jin Song, Yang Chen, Britta De Pessemier, Lora Khatib, Sudarshan A Shetty

Commun Biol· August 2025

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A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population.
Lora Khatib, Se Jin Song, Amanda H Dilmore, Jon G Sanders, Caitriona Brennan, Sudarshan A Shetty

mSystems· July 2025

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Characterizing gut microbial dysbiosis and exploring the effect of prebiotic fiber supplementation in patients with COPD.
Lieke E J van Iersel, Rosanne J H C G Beijers, Sami O Simons, Lisanne T Schuurman, Sudarshan A Shetty

Eur J Nutr· June 2025

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Pre-vaccination immunotypes reveal weak and robust antibody responders to influenza vaccination.
Alper Cevirgel, Sudarshan A Shetty, Martijn Vos, Nening M Nanlohy, Lisa Beckers

Aging Cell· February 2024

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A tiny fraction of all species forms most of nature: Rarity as a sticky state.
Egbert H van Nes, Diego G F Pujoni, Sudarshan A Shetty, Gerben Straatsma, Willem M de Vos

Proc Natl Acad Sci U S A· January 2024

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Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization.
Ziyu Huang, Yue Li, Heekuk Park, Martin Ho, Kanchan Bhardwaj, Sudarshan A Shetty

Gut Microbes· November 2023

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Frailty is related to serum inflammageing markers: results from the VITAL study.
Yannick van Sleen, Sudarshan A Shetty, Marieke van der Heiden, Milou C A Venema, Nicolas Gutiérrez-Melo

Immun Ageing· November 2023

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A tool to assess the mock community samples in 16S rRNA gene-based microbiota profiling studies.
Sudarshan A Shetty, Jolanda Kool, Susana Fuentes

Microbiome Res Rep· April 2023

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Reducing bias in microbiome research: Comparing methods from sample collection to sequencing.
Jolanda Kool, Liza Tymchenko, Sudarshan A Shetty, Susana Fuentes

Front Microbiol· March 2023

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Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits.
Sudarshan A Shetty, Paul B Stege, Joost Hordijk, Esther Gijsbers, Cindy M Dierikx

mSphere· December 2022

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Identification of aging-associated immunotypes and immune stability as indicators of post-vaccination immune activation.
Alper Cevirgel, Sudarshan A Shetty, Martijn Vos, Nening M Nanlohy, Lisa Beckers

Aging Cell· October 2022

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Author Correction: Inter-species metabolic interactions in an in-vitro minimal human gut microbiome of core bacteria.
Sudarshan A Shetty, Ben Kuipers, Siavash Atashgahi, Steven Aalvink, Hauke Smidt

NPJ Biofilms Microbiomes· October 2022

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Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties.
Sudarshan A Shetty, Ioannis Kostopoulos, Sharon Y Geerlings, Hauke Smidt, Willem M de Vos

ISME J· September 2022

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An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota.
Graça Pinto, Sudarshan A Shetty, Erwin G Zoetendal, Raquel F S Gonçalves, Ana C Pinheiro

NPJ Biofilms Microbiomes· September 2022

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Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria.
Sudarshan A Shetty, Ben Kuipers, Siavash Atashgahi, Steven Aalvink, Hauke Smidt

NPJ Biofilms Microbiomes· April 2022

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Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population.
Sudarshan A Shetty, Josine van Beek, Elske Bijvank, James Groot, Sjoerd Kuiling

Sci Rep· February 2022

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Impact of long-term dietary habits on the human gut resistome in the Dutch population.
Paul B Stege, Joost Hordijk, Sudarshan A Shetty, Michael Visser, Marco C Viveen

Sci Rep· February 2022

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Modulation of human intestinal microbiota in a clinical trial by consumption of a β-D-glucan-enriched extract obtained from Lentinula edodes.
Diego Morales, Sudarshan A Shetty, Bricia López-Plaza, Carmen Gómez-Candela, Hauke Smidt

Eur J Nutr· September 2021

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Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics.
Sudarshan A Shetty, Sjef Boeren, Thi P N Bui, Hauke Smidt, Willem M de Vos

Environ Microbiol· November 2020

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Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes.
Charlotte M van der Graaf, Javier Sánchez-España, Iñaki Yusta, Andrey Ilin, Sudarshan A Shetty

Microorganisms· August 2020

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Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes.
Peng Peng, Yue Lu, Tom N P Bosma, Ivonne Nijenhuis, Bart Nijsse, Sudarshan A Shetty

Microorganisms· May 2020

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Microbiome data science.
Sudarshan A Shetty, Leo Lahti

J Biosci· October 2019

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Reconstructing functional networks in the human intestinal tract using synthetic microbiomes.
Sudarshan A Shetty, Hauke Smidt, Willem M de Vos

Curr Opin Biotechnol· August 2019

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