Publications by authors named "Robin Warren"

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Undetected rifampicin-resistant tuberculosis associated with rpoB I491F and V170F mutations in Botswana: diagnostic implications.
Tuelo Mogashoa, Justice T Ngom, Johannes Loubser, Kedumetse Seru, Tuduetso Molefi, Robin M Warren

J Glob Antimicrob Resist· December 2025

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Treatment Outcomes With an Oral Short Course Regimen for Rifampicin-resistant Tuberculosis in a High HIV Prevalence, Programmatic Setting in South Africa.
Jacob A M Stadler, Johanna Kuhlin, Síle F Molloy, Nomfuneko Mtwa, Cindy Hayes, Robin Warren

Clin Infect Dis· November 2025

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Disseminated Mycobacterium simiae infection causing rhinosinusitis in a severely immunocompromised patient.
Christoffel Opperman, Nectarios Papavarnavas, Sally Candy, Sarishna Singh, Yonas Ghebrekristos, Robin Warren

Int J Infect Dis· November 2025

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exposure to clofazimine can select for delamanid and pretomanid resistance in .
Praharshinie Rupasinghe, Nabila Ismail, Wim Mulders, Robin M Warren, Lavania Joseph

Antimicrob Agents Chemother· November 2025

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Isolation of viable Mycobacterium bovis from faeces of naturally infected free-ranging rural domestic cattle (Bos taurus).
Rachiel Gumbo, Tristen Lourens, Deborah M Cooke, Tanya J Kerr, Robin M Warren

J Appl Microbiol· November 2025

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cultured in MGIT media for whole-genome sequencing application: a systematic literature review and meta-analysis.
Emilyn Costa Conceição, Felicia Wells, Abhinav Sharma, Mishka Haffejee, Brendon Mann, Robin Mark Warren

Microb Genom· November 2025

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Treatment outcomes of bedaquiline-resistant tuberculosis: a retrospective and matched cohort study.
Lindokuhle Mdlenyani, Zahraa Mohamed, Jacob A M Stadler, Nomfuneko Mtwa, Graeme Meintjes, Robin Warren

Lancet Infect Dis· October 2025

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Tuberculosis Disease Prevalence Among People Who Smoke Illicit Drugs: A Respondent- Driven Sampling Study in the Western Cape, South Africa.
Samantha Malatesta, Tara Carney, Nandi Niemand Wolhuter, Victoria Overbeck, Danie Theron, Robin M Warren

J Infect Dis· October 2025

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Insights into the Role of Rifampicin Exposure and Clinical Baseline Covariates on the Response to Pulmonary Tuberculosis Treatment.
Marie Wijk, Paolo Denti, Kamunkhwala Gausi, Bronwyn Myers, Tara Carney, Robin M Warren

Clin Infect Dis· October 2025

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Clonal spread of Mycobacterium monacense strains among patients with extrapulmonary mycobacteriosis.
Christoffel Opperman, Aysha Ahmed, Marianna De Kock, Claudia Spies, Michael Biggel, Robin Warren

Eur J Clin Microbiol Infect Dis· October 2025

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Consolidation of a genomic epidemiological surveillance network for tuberculosis (REVIGET) in northern and northeastern Brazil: a study protocol.
Emilyn Costa Conceição, Karla Valéria Batista Lima, Cristiane Cunha Frota, Theolis Costa Barbosa Bessa, Adriana Ayden Ferreira, Robin Mark Warren

Front Public Health· October 2025

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Population structure and emergence of resistance to new and repurposed drugs in XDR-TB: insights from a 10-year genomic study in the Western Cape, South Africa review.
Justice Tresor Ngom, Johannes Loubser, Elizna Maasdorp, Yonas Ghebrekristos, Sarishna Singh, Robin Mark Warren

Front Cell Infect Microbiol· September 2025

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Empowering tuberculosis genomic surveillance in Limpopo, South Africa through capacity building.
Vukosi Treasure Makondo, Kabelo Gabriel Kaapu, Felicia Wells, Abhinav Sharma, Molebogeng Ruth Lekalakala-Mokaba, Robin Warren

Front Public Health· September 2025

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Waste to worth: diagnostic accuracy of Xpert MTB/XDR on contaminated liquid cultures to salvage the detection of drug-resistant tuberculosis.
Yonas Ghebrekristos, Erick Auma, Zama Mahlobo, Rouxjeane Venter, Natalie Beylis, Robin Warren

J Clin Microbiol· August 2025

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Unpacking bedaquiline heteroresistance: the importance of intermediate profiles for phenotypic drug susceptibility testing.
Nabila Ismail, Frik Sirgel, Shaheed Vally Omar, Shatha Omar, Marianna de Kock, Robin M Warren

Antimicrob Agents Chemother· August 2025

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Amplicon Sequencing using the Long-Read Sequencing Technologies.
Morwasehla Modjadji, Brendon Coenrad Mann, Johannes Loubser, Jennifer Williams, Janré Steyn, Robin Mark Warren

J Vis Exp· August 2025

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Diagnostic accuracy of Truenat MTB Ultima on sputum for pulmonary tuberculosis diagnosis in an HIV-endemic setting.
Shima M Abdulgader, Arthur M Chiwaya, Welile V Nwamba, Byron W P Reeve, Zaida Palmer, Robin Warren

Clin Microbiol Infect· July 2025

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Oral washes and tongue swabs for Xpert MTB/RIF Ultra-based tuberculosis diagnosis in people with and without the ability to make sputum.
Loren Rockman, Shima M Abdulgader, Stephanie Minnies, Zaida Palmer, Charissa C Naidoo, Robin M Warren

Clin Infect Dis· July 2025

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Matrix-based DNA Extraction for Targeted Next-Generation Sequencing on Decontaminated Sputum Samples.
Jennifer Williams, Janré Steyn, Emilyn Costa Conceição, Felicia Bernita Wells, Melanie Grobbelaar, Robin Mark Warren

J Vis Exp· June 2025

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The feasibility of respondent-driven sampling with people who use drugs in rural Western Cape, South Africa: A qualitative study.
Tara Carney, Kim Johnson, Christina Meade, Nandi Niemand, Jennifer Rooney, Robin Warren

PLOS Glob Public Health· June 2025

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Mycobacterial DNA Extraction using Bead Beating in Custom Buffer Followed by NGS Workflow.
Jason D Limberis, Alina Nalyvayko, Janré Steyn, Jennifer Williams, Melanie Grobbelaar, Robin M Warren

J Vis Exp· June 2025

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Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species.
Maximillian G Marin, Natalia Quinones-Olvera, Christoph Wippel, Mahboobeh Behruznia, Brendan M Jeffrey, Robin M Warren

Bioinformatics· May 2025

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DNA extraction: Implications for NTM identification and amplicon sequencing.
Christoffel J Opperman, Salim Ben Amor, Greshan Kisten, Brendon C Mann, Janré Steyn, Robin Warren

S Afr J Infect Dis· May 2025

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Waste to Worth: A diagnostic accuracy of Xpert MTB/XDR on contaminated liquid cultures to salvage the detection of drug-resistant tuberculosis.
Yonas Ghebrekristos, Erick Auma, Zama Mahlobo, Rouxjeane Venter, Natalie Beylis, Robin Warren

Res Sq· April 2025

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Oral washes and tongue swabs for Xpert MTB/RIF Ultra-based tuberculosis diagnosis in people with and without the ability to make sputum.
Loren Rockman, Shima Abdulgader, Stephanie Minnies, Zaida Palmer, Charissa C Naidoo, Robin M Warren

Res Sq· March 2025

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