Publications by authors named "Ron Y Pinter"

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A Note on GRegNetSim: A Tool for the Discrete Simulation and Analysis of Genetic Regulatory Networks.
Dor Ganor, Ron Y Pinter, Meirav Zehavi

IEEE/ACM Trans Comput Biol Bioinform· July 2025

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Three-dimensional eukaryotic genomic organization is strongly correlated with codon usage expression and function.
Alon Diament, Ron Y Pinter, Tamir Tuller

Nat Commun· December 2014

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Interferon-beta induces distinct gene expression response patterns in human monocytes versus T cells.
Noa Henig, Nili Avidan, Ilana Mandel, Elsebeth Staun-Ram, Elizabeta Ginzburg, Ron Y Pinter

PLoS One· November 2013

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The effective application of a discrete transition model to explore cell-cycle regulation in yeast.
Amir Rubinstein, Ofir Hazan, Benny Chor, Ron Y Pinter, Yona Kassir

BMC Res Notes· August 2013

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Comparative metagenomics of microbial traits within oceanic viral communities.
Itai Sharon, Natalia Battchikova, Eva-Mari Aro, Carmela Giglione, Thierry Meinnel, Ron Y Pinter

ISME J· July 2011

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Pathway-based functional analysis of metagenomes.
Itai Sharon, Sivan Bercovici, Ron Y Pinter, Tomer Shlomi

J Comput Biol· March 2011

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Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.
Adi Mano, Tamir Tuller, Oded Béjà, Ron Y Pinter

BMC Bioinformatics· January 2010

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Photosystem I gene cassettes are present in marine virus genomes.
Itai Sharon, Ariella Alperovitch, Forest Rohwer, Matthew Haynes, Fabian Glaser, Ron Y Pinter

Nature· September 2009

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A computational approach for genome-wide mapping of splicing factor binding sites.
Martin Akerman, Hilda David-Eden, Ron Y Pinter, Yael Mandel-Gutfreund

Genome Biol· July 2009

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Seeded tree alignment.
Antoni Lozano, Ron Y Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson

IEEE/ACM Trans Comput Biol Bioinform· January 2009

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Translation towards personalized medicine in Multiple Sclerosis.
Ariel Miller, Nili Avidan, Noa Tzunz-Henig, Lea Glass-Marmor, Izabella Lejbkowicz, Ron Y Pinter

J Neurol Sci· November 2008

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Constraint-based functional similarity of metabolic genes: going beyond network topology.
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y Pinter

Bioinformatics· August 2007

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Faithful modeling of transient expression and its application to elucidating negative feedback regulation.
Amir Rubinstein, Vyacheslav Gurevich, Zohar Kasulin-Boneh, Lilach Pnueli, Yona Kassir, Ron Y Pinter

Proc Natl Acad Sci U S A· April 2007

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On the repeat-annotated phylogenetic tree reconstruction problem.
Firas Swidan, Michal Ziv-Ukelson, Ron Y Pinter

J Comput Biol· October 2006

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An integrative method for accurate comparative genome mapping.
Firas Swidan, Eduardo P C Rocha, Michael Shmoish, Ron Y Pinter

PLoS Comput Biol· August 2006

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Computer modelling of antifolate inhibition of folate metabolism using hybrid functional petri nets.
Yehuda G Assaraf, Ilan Ifergan, Wisam N Kadry, Ron Y Pinter

J Theor Biol· June 2006

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A high-throughput approach for associating MicroRNAs with their activity conditions.
Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y Pinter, Zohar Yakhini

J Comput Biol· March 2006

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Alignment of metabolic pathways.
Ron Y Pinter, Oleg Rokhlenko, Esti Yeger-Lotem, Michal Ziv-Ukelson

Bioinformatics· August 2005

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Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.
Esti Yeger-Lotem, Shmuel Sattath, Nadav Kashtan, Shalev Itzkovitz, Ron Milo, Ron Y Pinter

Proc Natl Acad Sci U S A· April 2004

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Genomic sorting with length-weighted reversals.
Ron Y Pinter, Steven Skiena

Genome Inform· November 2003

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