Publications by authors named "Ruping Sun"

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The impact of combined Gua Sha and myofascial release techniques on upper limb dysfunction in patients with breast cancer and axillary web syndrome: a prospective case series study.
Ruping Sun, Yanyan Liao

Support Care Cancer· March 2025

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Parameter estimation from single patient, single time-point sequencing data of recurrent tumors.
Kevin Leder, Ruping Sun, Zicheng Wang, Xuanming Zhang

J Math Biol· October 2024

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Evolving copy number gains promote tumor expansion and bolster mutational diversification.
Zicheng Wang, Yunong Xia, Lauren Mills, Athanasios N Nikolakopoulos, Nicole Maeser, Ruping Sun

Nat Commun· March 2024

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Centrosomal Protein 55 (CEP55) Drives Immune Exclusion and Resistance to Immune Checkpoint Inhibitors in Colorectal Cancer.
Dechen Wangmo, Travis J Gates, Xianda Zhao, Ruping Sun, Subbaya Subramanian

Vaccines (Basel)· January 2024

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Strontium Ranelate Ameliorates Intervertebral Disc Degeneration via Regulating TGF-β1/NF-κB Axis.
Ruping Sun, Jian Zhu, Kaiqiang Sun, Lu Gao, Bing Zheng

Int J Med Sci· November 2023

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Oncogene-like addiction to aneuploidy in human cancers.
Vishruth Girish, Asad A Lakhani, Sarah L Thompson, Christine M Scaduto, Leanne M Brown, Ruping Sun

Science· August 2023

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The deubiquitinase USP11 ameliorates intervertebral disc degeneration by regulating oxidative stress-induced ferroptosis via deubiquitinating and stabilizing Sirt3.
Jian Zhu, Ruping Sun, Kaiqiang Sun, Chen Yan, Jialin Jiang

Redox Biol· June 2023

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Hesperidin mitigates oxidative stress-induced ferroptosis in nucleus pulposus cells via Nrf2/NF-κB axis to protect intervertebral disc from degeneration.
Jian Zhu, Ruping Sun, Chen Yan, Kaiqiang Sun, Lu Gao

Cell Cycle· May 2023

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Somatic variant detection from multi-sampled genomic sequencing data of tumor specimens using the ith.Variant pipeline.
Nicole Maeser, Aziz Khan, Ruping Sun

STAR Protoc· March 2023

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Oncogene-like addiction to aneuploidy in human cancers.
Vishruth Girish, Asad A Lakhani, Christine M Scaduto, Sarah L Thompson, Leanne M Brown, Ruping Sun

bioRxiv· January 2023

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Elements and evolutionary determinants of genomic divergence between paired primary and metastatic tumors.
Ruping Sun, Athanasios N Nikolakopoulos

PLoS Comput Biol· March 2021

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Characterizing the ecological and evolutionary dynamics of cancer.
Nastaran Zahir, Ruping Sun, Daniel Gallahan, Robert A Gatenby, Christina Curtis

Nat Genet· August 2020

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Quantitative evidence for early metastatic seeding in colorectal cancer.
Zheng Hu, Jie Ding, Zhicheng Ma, Ruping Sun, Jose A Seoane

Nat Genet· July 2019

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Publisher Correction: Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy.
Jennifer L Caswell-Jin, Katherine McNamara, Johannes G Reiter, Ruping Sun, Zheng Hu

Nat Commun· May 2019

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Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy.
Jennifer L Caswell-Jin, Katherine McNamara, Johannes G Reiter, Ruping Sun, Zheng Hu

Nat Commun· February 2019

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Big Bang Tumor Growth and Clonal Evolution.
Ruping Sun, Zheng Hu, Christina Curtis

Cold Spring Harb Perspect Med· May 2018

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Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element.
Seung Woo Cho, Jin Xu, Ruping Sun, Maxwell R Mumbach, Ava C Carter

Cell· May 2018

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Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors.
Julie George, Vonn Walter, Martin Peifer, Ludmil B Alexandrov, Danila Seidel, Ruping Sun

Nat Commun· March 2018

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Between-region genetic divergence reflects the mode and tempo of tumor evolution.
Ruping Sun, Zheng Hu, Andrea Sottoriva, Trevor A Graham, Arbel Harpak

Nat Genet· July 2017

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A population genetics perspective on the determinants of intra-tumor heterogeneity.
Zheng Hu, Ruping Sun, Christina Curtis

Biochim Biophys Acta Rev Cancer· April 2017

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Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.
Lynnette Fernandez-Cuesta, Ruping Sun, Roopika Menon, Julie George, Susanne Lorenz

Genome Biol· January 2015

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CD74-NRG1 fusions in lung adenocarcinoma.
Lynnette Fernandez-Cuesta, Dennis Plenker, Hirotaka Osada, Ruping Sun, Roopika Menon

Cancer Discov· April 2014

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Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids.
Lynnette Fernandez-Cuesta, Martin Peifer, Xin Lu, Ruping Sun, Luka Ozretić

Nat Commun· March 2014

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Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer.
Martin Peifer, Lynnette Fernández-Cuesta, Martin L Sos, Julie George, Danila Seidel, Ruping Sun

Nat Genet· October 2012

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Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Ruping Sun, Michael I Love, Tomasz Zemojtel, Anne-Katrin Emde, Ho-Ryun Chung

Bioinformatics· April 2012

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