Publications by authors named "Ryan Emerson"

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AlphaBind, a domain-specific model to predict and optimize antibody-antigen binding affinity.
Aditya A Agarwal, James Harrang, David Noble, Kerry L McGowan, Adrian W Lange, Ryan O Emerson

MAbs· December 2025

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Characterisation of T cell receptor repertoires in coeliac disease.
Lik Wee Lee, Shahin Shafiani, Beryl Crossley, Ryan O Emerson, David Williamson

J Clin Pathol· January 2024

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A dataset comprised of binding interactions for 104,972 antibodies against a SARS-CoV-2 peptide.
Emily Engelhart, Ryan Emerson, Leslie Shing, Chelsea Lennartz, Daniel Guion

Sci Data· October 2022

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Massively multiplexed affinity characterization of therapeutic antibodies against SARS-CoV-2 variants.
Emily Engelhart, Randolph Lopez, Ryan Emerson, Charles Lin, Colleen Shikany

Antib Ther· April 2022

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Lymphocytic infiltration in stage II microsatellite stable colorectal tumors: A retrospective prognosis biomarker analysis.
Rebeca Sanz-Pamplona, Marilena Melas, Asaf Maoz, Stephanie L Schmit, Hedy Rennert, Ryan Emerson

PLoS Med· September 2020

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Clonality and antigen-specific responses shape the prognostic effects of tumor-infiltrating T cells in ovarian cancer.
Takemasa Tsuji, Kevin H Eng, Junko Matsuzaki, Sebastiano Battaglia, J Brian Szender, Ryan O Emerson

Oncotarget· July 2020

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Analytical evaluation of the clonoSEQ Assay for establishing measurable (minimal) residual disease in acute lymphoblastic leukemia, chronic lymphocytic leukemia, and multiple myeloma.
Travers Ching, Megan E Duncan, Tera Newman-Eerkes, Mollie M E McWhorter, Jeffrey M Tracy, Ryan O Emerson

BMC Cancer· June 2020

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Comprehensive T cell repertoire characterization of non-small cell lung cancer.
Alexandre Reuben, Jiexin Zhang, Shin-Heng Chiou, Rachel M Gittelman, Jun Li, Ryan Emerson

Nat Commun· January 2020

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T Cell Repertoire Dynamics during Pregnancy in Multiple Sclerosis.
Caren Ramien, Erik C Yusko, Jan Broder Engler, Stefanie Gamradt, Kostas Patas, Ryan O Emerson

Cell Rep· October 2019

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Longitudinal immunosequencing in healthy people reveals persistent T cell receptors rich in highly public receptors.
Nathaniel D Chu, Haixin Sarah Bi, Ryan O Emerson, Anna M Sherwood, Michael E Birnbaum

BMC Immunol· June 2019

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High-throughput sequencing of the T-cell receptor β chain gene distinguishes 2 subgroups of cutaneous T-cell lymphoma.
Jie Wang, Bryan Rea, Paul Haun, Ryan Emerson, Ilan Kirsch

J Am Acad Dermatol· April 2019

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Radiotherapy induces responses of lung cancer to CTLA-4 blockade.
Silvia C Formenti, Nils-Petter Rudqvist, Encouse Golden, Benjamin Cooper, Erik Wennerberg, Ryan O Emerson

Nat Med· December 2018

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Early Stage HER2-Positive Breast Cancers Not Achieving a pCR From Neoadjuvant Trastuzumab- or Pertuzumab-Based Regimens Have an Immunosuppressive Phenotype.
Jeremy Force, Lynn J Howie, Sara E Abbott, Rex Bentley, P Kelly Marcom, Ryan Emerson

Clin Breast Cancer· October 2018

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Role of high-throughput sequencing in the diagnosis of cutaneous T-cell lymphoma.
Bryan Rea, Paul Haun, Ryan Emerson, Marissa Vignali, Midhat Farooqi

J Clin Pathol· September 2018

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Staged development of long-lived T-cell receptor αβ T17 resident memory T-cell population to Candida albicans after skin infection.
Chang Ook Park, Xiujun Fu, Xiaodong Jiang, Youdong Pan, Jessica E Teague, Ryan O Emerson

J Allergy Clin Immunol· August 2018

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A Diverse Lipid Antigen-Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis.
William S DeWitt, Krystle K Q Yu, Damien B Wilburn, Anna Sherwood, Marissa Vignali, Ryan O Emerson

J Immunol· August 2018

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Immunophenotyping of pediatric brain tumors: correlating immune infiltrate with histology, mutational load, and survival and assessing clonal T cell response.
Ashley S Plant, Shohei Koyama, Claire Sinai, Isaac H Solomon, Gabriel K Griffin, Ryan Emerson

J Neurooncol· April 2018

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CD1b Tetramers Identify T Cells that Recognize Natural and Synthetic Diacylated Sulfoglycolipids from Mycobacterium tuberculosis.
Charlotte A James, Krystle K Q Yu, Martine Gilleron, Jacques Prandi, Vijayendar R Yedulla, Ryan O Emerson

Cell Chem Biol· April 2018

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Radiotherapy and CTLA-4 Blockade Shape the TCR Repertoire of Tumor-Infiltrating T Cells.
Nils-Petter Rudqvist, Karsten A Pilones, Claire Lhuillier, Erik Wennerberg, John-William Sidhom, Ryan O Emerson

Cancer Immunol Res· February 2018

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Robust Antitumor Responses Result from Local Chemotherapy and CTLA-4 Blockade.
Charlotte E Ariyan, Mary Sue Brady, Robert H Siegelbaum, Jian Hu, Danielle M Bello, Ryan Emerson

Cancer Immunol Res· February 2018

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TCR Repertoire Intratumor Heterogeneity in Localized Lung Adenocarcinomas: An Association with Predicted Neoantigen Heterogeneity and Postsurgical Recurrence.
Alexandre Reuben, Rachel Gittelman, Jianjun Gao, Jiexin Zhang, Erik C Yusko, Ryan Emerson

Cancer Discov· October 2017

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T-cell infiltration and clonality correlate with programmed cell death protein 1 and programmed death-ligand 1 expression in patients with soft tissue sarcomas.
Seth M Pollack, Qianchuan He, Jennifer H Yearley, Ryan Emerson, Marissa Vignali

Cancer· September 2017

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Fractionated Radiation Therapy Stimulates Antitumor Immunity Mediated by Both Resident and Infiltrating Polyclonal T-cell Populations when Combined with PD-1 Blockade.
Simon J Dovedi, Eleanor J Cheadle, Amy L Popple, Edmund Poon, Michelle Morrow, Ryan O Emerson

Clin Cancer Res· September 2017

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Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.
Ryan O Emerson, William S DeWitt, Marissa Vignali, Jenna Gravley, Joyce K Hu

Nat Genet· May 2017

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Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.
Yonit Lavin, Soma Kobayashi, Andrew Leader, El-Ad David Amir, Naama Elefant, Ryan O Emerson

Cell· May 2017

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