Publications by authors named "Samodha Fernando"

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Impact of organic acid treatment on the microbial community composition of raw beef during extended refrigerated storage.
Samuel C Watson, Nirosh D Aluthge, Rebecca A Furbeck, Samodha C Fernando, Byron D Chaves

Food Microbiol· October 2025

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Prediction accuracy for feed intake and body weight gain using host genomic and rumen metagenomic data in beef cattle.
Andrew Lakamp, Seidu Adams, Larry Kuehn, Warren Snelling, James Wells, Samodha Fernando

Genet Sel Evol· October 2025

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International Symposium on Ruminant Physiology: Stochastic and deterministic factors that shape the rumen microbiome.
Samodha C Fernando, Seidu Adams, Andrew Lakamp, Matthew L Spangler

J Dairy Sci· July 2025

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Assessment of Antimicrobial Exposure on Generic and spp. Concentration, Prevalence, and Resistance to Antimicrobials in Beef Cattle Raised with or Without Antimicrobials.
Colten W Dornbach, James E Wells, Elaine D Berry, Samodha C Fernando, Paul R Broadway

Foodborne Pathog Dis· February 2025

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Genetic influence on the composition of the ocular microbiome in preweaned beef calves.
Andrew D Lakamp, Alison C Neujahr, Matthew M Hille, John D Loy, Samodha C Fernando

J Anim Sci· January 2025

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Short communication: imputation accuracy of host genomic data from metagenomic sequence information.
Andrew D Lakamp, Alison C Neujahr, Samodha C Fernando, Warren M Snelling, Matthew L Spangler

J Anim Sci· January 2025

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Environmental Monitoring of Nebraska Ready-to-eat Meat Processing Establishments Resulted in the Isolation of Listeria Alongside Pseudomonas Highly Resistant to Quaternary Ammonia Sanitizer.
Samuel C Watson, Alison C Neujahr, Byron D Chaves, Samodha C Fernando, Gary A Sullivan

J Food Prot· December 2024

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Gut microbiota profiling in injection drug users with and without HIV-1 infection in Puerto Rico.
Nirosh Aluthge, Seidu Adams, Carmen A Davila, Nova R Gocchi Carrasco, Kathy S Chiou, Samodha C Fernando

Front Microbiol· November 2024

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Cognitive Intraindividual variability in injection drug use among Hispanic residents of Puerto Rico.
Kathy S Chiou, Jeremy A Feiger, Rachael L Snyder, Carmen A Davila, Nova Gocci Carrasco, Samodha Fernando

Appl Neuropsychol Adult· August 2024

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Effects of relative humidity on dry-aged beef quality.
Felipe A Ribeiro, Soon K Lau, Rebecca A Furbeck, Nicolas J Herrera, Morgan L Henriott, Samodha C Fernando

Meat Sci· July 2024

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Gut Microbial Composition of Cyprinella lutrensis (Red Shiner) and Notropis stramineus (Sand Shiner): Insights from Wild Fish Populations.
Krista Starr, Federica Montesanto, Esther Perisho, Nirosh Aluthge, Mark Pegg, Samodha C Fernando

Microb Ecol· May 2024

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Rapid detection of high consequence and emerging viral pathogens in pigs.
Alison C Neujahr, Duan S Loy, John Dustin Loy, Bruce W Brodersen, Samodha C Fernando

Front Vet Sci· February 2024

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Immune profiling in Puerto Rican injection drug users with and without HIV-1 infection.
Sydney J Bennett, Carmen Ana Davila, Zahiraliz Reyes, Aníbal Valentín-Acevedo, Kim Gocchi Carrasco, Samodha Fernando

J Leukoc Biol· July 2023

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Antibimicrobial Susceptibility of Trimethoprim-Sulfamethoxazole and 3rd-Generation Cephalosporin-Resistant Isolates Enumerated Longitudinally from Feedlot Arrival to Harvest in High-Risk Beef Cattle Administered Common Metaphylactic Antimicrobials.
Nathan S Long, Kristin E Hales, Elaine D Berry, Jerrad F Legako, Dale R Woerner, Samodha C Fernando

Foodborne Pathog Dis· July 2023

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Spoilage Pseudomonas survive common thermal processing schedules and grow in emulsified meat during extended vacuum storage.
Samuel C Watson, Rebecca A Furbeck, Samodha C Fernando, Byron D Chaves, Gary A Sullivan

J Food Sci· May 2023

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Evidence for a Causal Role for Escherichia coli Strains Identified as Adherent-Invasive (AIEC) in Intestinal Inflammation.
Hatem Kittana, João C Gomes-Neto, Kari Heck, Anthony F Juritsch, Jason Sughroue, Samodha C Fernando

mSphere· April 2023

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The persistence and stabilization of auxiliary genes in the human skin virome.
Ema H Graham, Wesley A Tom, Alison C Neujahr, Michael S Adamowicz, Jennifer L Clarke, Samodha C Fernando

Virol J· March 2023

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Employing Respondent Driven Sampling (RDS) to recruit people who inject drugs (PWID) and other hard-to-reach populations during COVID-19: Lessons learned.
Roberto Abadie, Patrick Habecker, Kimberly Gocchi Carrasco, Kathy S Chiou, Samodha Fernando

Front Psychiatry· October 2022

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The effects of administering different metaphylactic antimicrobials on growth performance and health outcomes of high-risk, newly received feedlot steers.
Carley M Coppin, Taylor M Smock, Cory L Helmuth, Jeff L Manahan, Nathan S Long, Samodha C Fernando

Transl Anim Sci· October 2022

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Metaphylactic antimicrobial effects on occurrences of antimicrobial resistance in Salmonella enterica, Escherichia coli and Enterococcus spp. measured longitudinally from feedlot arrival to harvest in high-risk beef cattle.
Nathan S Long, James E Wells, Elaine D Berry, Jerrad F Legako, Dale R Woerner, Samodha C Fernando

J Appl Microbiol· September 2022

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Genome Sequence of Feline Papillomavirus Strain P20 Assembled from Metagenomic Data from the Skin of a House Cat Owner.
Ema H Graham, Michael S Adamowicz, Peter C Angeletti, Jennifer L Clarke, Samodha C Fernando

Microbiol Resour Announc· July 2022

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The application of the skin virome for human identification.
Ema H Graham, Jennifer L Clarke, Samodha C Fernando, Joshua R Herr, Michael S Adamowicz

Forensic Sci Int Genet· March 2022

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Effect of fiber source and crude protein level on nursery pig performance and fecal microbial communities.
Kelsey L Batson, Alison C Neujahr, Thomas Burkey, Samodha C Fernando, Mike D Tokach

J Anim Sci· December 2021

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Effects of mannan oligosaccharides and Lactobacillus mucosae on growth performance, immune response, and gut health of weanling pigs challenged with Escherichia coli lipopolysaccharides.
Yanshuo S Li, Joice V San Andres, Melanie D Trenhaile-Grannemann, Dana M van Sambeek, Kelly C Moore, Samodha C Fernando

J Anim Sci· December 2021

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Insights into rumen microbial biosynthetic gene cluster diversity through genome-resolved metagenomics.
Christopher L Anderson, Samodha C Fernando

Commun Biol· June 2021

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