Publications by authors named "Samuel Flores"

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RNase P cleavage of pseudoknot substrates reveals differences in active site architecture that depend on residue N-1 in the 5' leader.
David M Kosek, J Luis Leal, Ema Kikovska-Stojanovska, Guanzhong Mao, Shiying Wu, Samuel C Flores

RNA Biol· December 2025

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Combining flipped-classroom and spaced-repetition learning in a master-level bioinformatics course.
Gabriele Pozzati, Samuel Coulbourn Flores

PLoS Comput Biol· April 2025

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Research Note: A deep learning method segments chicken keel bones from whole-body X-ray images.
Moh Sallam, Samuel Coulbourn Flores, Dirk Jan de Koning, Martin Johnsson

Poult Sci· November 2024

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Are kuravirus capsid diameters quantized? The first all-atom genome tracing method for double-stranded DNA viruses.
Samuel Coulbourn Flores, Michal Malý, Dominik Hrebík, Pavel Plevka, Jiří Černý

Nucleic Acids Res· February 2024

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Amino acid substitutions in human growth hormone affect secondary structure and receptor binding.
Andrei Rajkovic, Sandesh Kanchugal, Eldar Abdurakhmanov, Rebecca Howard, Sebastian Wärmländer, Samuel Coulbourn Flores

PLoS One· March 2023

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Mining the Protein Data Bank to improve prediction of changes in protein-protein binding.
Samuel Coulbourn Flores, Athanasios Alexiou, Anastasios Glaros

PLoS One· December 2021

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Molecular Dynamics Simulations Suggest a Non-Doublet Decoding Model of -1 Frameshifting by tRNA.
Thomas Caulfield, Matt Coban, Alex Tek, Samuel Coulbourn Flores

Biomolecules· November 2019

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Insights from engineering the Affibody-Fc interaction with a computational-experimental method.
Masoumeh Nosrati, Sara Solbak, Olle Nordesjö, Mikael Nissbeck, Daniel F A R Dourado, Samuel Coulbourn Flores

Protein Eng Des Sel· September 2017

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Hospital-Level Variation in Practice Patterns and Patient Outcomes for Pediatric Patients Hospitalized With Functional Constipation.
Jamie Librizzi, Samuel Flores, Keith Morse, Kelly Kelleher, Jodi Carter

Hosp Pediatr· June 2017

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Modeling and fitting protein-protein complexes to predict change of binding energy.
Daniel F A R Dourado, Samuel Coulbourn Flores

Sci Rep· May 2016

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MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.
Alex Tek, Andrei A Korostelev, Samuel Coulbourn Flores

Nucleic Acids Res· January 2016

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Structural and Functional Impact of Parkinson Disease-Associated Mutations in the E3 Ubiquitin Ligase Parkin.
Fabienne C Fiesel, Thomas R Caulfield, Elisabeth L Moussaud-Lamodière, Kotaro Ogaki, Daniel F A R Dourado, Samuel C Flores

Hum Mutat· August 2015

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A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate.
Ravi Kiran Koripella, Mikael Holm, Daniel Dourado, Chandra Sekhar Mandava, Samuel Flores

Sci Rep· August 2015

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Cysteines in the neuropilin-2 MAM domain modulate receptor homooligomerization and signal transduction.
Rachael Barton, Alyssa Driscoll, Samuel Flores, Durlav Mudbhari, Theresa Collins

Biopolymers· July 2015

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Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin.
Thomas R Caulfield, Fabienne C Fiesel, Elisabeth L Moussaud-Lamodière, Daniel F A R Dourado, Samuel C Flores

PLoS Comput Biol· November 2014

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A multiscale approach to predicting affinity changes in protein-protein interfaces.
Daniel F A R Dourado, Samuel Coulbourn Flores

Proteins· October 2014

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Fast fitting to low resolution density maps: elucidating large-scale motions of the ribosome.
Samuel Coulbourn Flores

Nucleic Acids Res· January 2014

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Insights into diseases of human telomerase from dynamical modeling.
Samuel Coulbourn Flores, Georgeta Zemora, Christina Waldsich

Pac Symp Biocomput· December 2013

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
Rocco Moretti, Sarel J Fleishman, Rudi Agius, Mieczyslaw Torchala, Paul A Bates, Samuel Flores

Proteins· November 2013

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The use of the tracer methodology to assess the quality of care for patients enrolled in Medical Insurance for a New Generation.
Luis Durán-Arenas, Onofre Muñoz-Hernández, Luz Del Carmen Hernández-Ramírez, Luis Jasso-Gutiérrez, Samuel Flores

Salud Publica Mex· February 2013

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Multiscale modeling of macromolecular biosystems.
Samuel C Flores, Julie Bernauer, Seokmin Shin, Ruhong Zhou, Xuhui Huang

Brief Bioinform· July 2012

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
José Almeida Cruz, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Samuel Coulbourn Flores

RNA· April 2012

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Fast flexible modeling of RNA structure using internal coordinates.
Samuel Coulbourn Flores, Michael A Sherman, Christopher M Bruns, Peter Eastman, Russ Biagio Altman

IEEE/ACM Trans Comput Biol Bioinform· January 2012

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Predicting protein ligand binding motions with the conformation explorer.
Samuel C Flores, Mark B Gerstein

BMC Bioinformatics· October 2011

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Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.
Mohammad Poursina, Kishor D Bhalerao, Samuel C Flores, Kurt S Anderson, Alain Laederach

Methods Enzymol· April 2011

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