Publications by authors named "Shane Lofgren"

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Author Correction: Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma.
Pawel K Mazur, Alexander Herner, Stephano S Mello, Matthias Wirth, Simone Hausmann, Shane M Lofgren

Nat Med· July 2024

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Multiplexed transcriptomic profiling of the fate of human CAR T cells in vivo via genetic barcoding with shielded small nucleotides.
Xiaoyin Lu, Shane M Lofgren, Yuehui Zhao, Pawel K Mazur

Nat Biomed Eng· September 2023

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Elevated NSD3 histone methylation activity drives squamous cell lung cancer.
Gang Yuan, Natasha M Flores, Simone Hausmann, Shane M Lofgren, Vladlena Kharchenko

Nature· February 2021

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SETD5-Coordinated Chromatin Reprogramming Regulates Adaptive Resistance to Targeted Pancreatic Cancer Therapy.
Zhentian Wang, Simone Hausmann, Ruitu Lyu, Tie-Mei Li, Shane M Lofgren

Cancer Cell· June 2020

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High-throughput quantitative histology in systemic sclerosis skin disease using computer vision.
Chase Correia, Seamus Mawe, Shane Lofgren, Roberta G Marangoni, Jungwha Lee

Arthritis Res Ther· March 2020

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METTL13 Methylation of eEF1A Increases Translational Output to Promote Tumorigenesis.
Shuo Liu, Simone Hausmann, Scott Moore Carlson, Mary Esmeralda Fuentes, Joel William Francis, Shane Michael Lofgren

Cell· January 2019

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Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases.
Francesco Vallania, Andrew Tam, Shane Lofgren, Steven Schaffert, Tej D Azad

Nat Commun· November 2018

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Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations.
Aurelie Tomczak, Jonathan M Mortensen, Rainer Winnenburg, Charles Liu, Dominique T Alessi, Shane Lofgren

Sci Rep· March 2018

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Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes.
Marvin H Gee, Arnold Han, Shane M Lofgren, John F Beausang, Juan L Mendoza

Cell· January 2018

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Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury.
Timothy E Sweeney, Shane Lofgren, Purvesh Khatri, Angela J Rogers

Am J Respir Cell Mol Biol· August 2017

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EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.
Winston A Haynes, Francesco Vallania, Charles Liu, Erika Bongen, Aurelie Tomczak, Shane Lofgren

Pac Symp Biocomput· July 2017

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Integrated, multicohort analysis of systemic sclerosis identifies robust transcriptional signature of disease severity.
Shane Lofgren, Monique Hinchcliff, Mary Carns, Tammara Wood, Kathleen Aren

JCI Insight· December 2016

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CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer.
Kipp Weiskopf, Nadine S Jahchan, Peter J Schnorr, Sandra Cristea, Aaron M Ring, Shane M Lofgren

J Clin Invest· July 2016

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Coordination of stress signals by the lysine methyltransferase SMYD2 promotes pancreatic cancer.
Nicolas Reynoird, Pawel K Mazur, Timo Stellfeld, Natasha M Flores, Shane M Lofgren

Genes Dev· April 2016

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Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma.
Pawel K Mazur, Alexander Herner, Stephano S Mello, Matthias Wirth, Simone Hausmann, Shane M Lofgren

Nat Med· October 2015

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