Publications by authors named "Sheila Reynolds"

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MITI minimum information guidelines for highly multiplexed tissue images.
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen

Nat Methods· March 2022

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Discovery of driver non-coding splice-site-creating mutations in cancer.
Song Cao, Daniel Cui Zhou, Clara Oh, Reyka G Jayasinghe, Yanyan Zhao, Sheila Reynolds

Nat Commun· November 2020

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Sheila M Reynolds

Immunity· August 2019

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Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data.
Galen F Gao, Joel S Parker, Sheila M Reynolds, Tiago C Silva, Liang-Bo Wang

Cell Syst· July 2019

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Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.
Zhuyi Xue, René L Warren, Ewan A Gibb, Daniel MacMillan, Johnathan Wong, Sheila Reynolds

BMC Genomics· July 2018

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Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.
Qingsong Gao, Wen-Wei Liang, Steven M Foltz, Gnanavel Mutharasu, Reyka G Jayasinghe, Sheila M Reynolds

Cell Rep· April 2018

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Systematic Analysis of Splice-Site-Creating Mutations in Cancer.
Reyka G Jayasinghe, Song Cao, Qingsong Gao, Michael C Wendl, Nam Sy Vo, Sheila M Reynolds

Cell Rep· April 2018

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Pathogenic Germline Variants in 10,389 Adult Cancers.
Kuan-Lin Huang, R Jay Mashl, Yige Wu, Deborah I Ritter, Jiayin Wang, Sheila Reynolds

Cell· April 2018

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Sheila M Reynolds

Immunity· April 2018

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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Gustavo Glusman, Peter W Rose, Andreas Prlić, Jennifer Dougherty, José M Duarte, Sheila M Reynolds

Genome Med· December 2017

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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.
Sheila M Reynolds, Michael Miller, Phyliss Lee, Kalle Leinonen, Suzanne M Paquette

Cancer Res· November 2017

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Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.
Christopher L Plaisier, Sofie O'Brien, Brady Bernard, Sheila Reynolds, Zac Simon

Cell Syst· August 2016

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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

N Engl J Med· June 2015

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Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.
Justin Ashworth, Brady Bernard, Sheila Reynolds, Christopher L Plaisier, Ilya Shmulevich

Nucleic Acids Res· December 2014

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Applying the critical velocity model for an off-season interval training program.
Ida E Clark, Brianne M West, Sheila K Reynolds, Steven R Murray, Robert W Pettitt

J Strength Cond Res· December 2013

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Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer.
Da Yang, Yan Sun, Limei Hu, Hong Zheng, Ping Ji, Sheila Reynolds

Cancer Cell· February 2013

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Comparison of the effectiveness of two protocols for treating nursing home residents with advanced dementia.
Christine R Kovach, Michelle R Simpson, Laura Joosse, Brent R Logan, Patricia E Noonan, Sheila A Reynolds

Res Gerontol Nurs· October 2012

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Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens.
Sheila M Reynolds, Jeff A Bilmes, William Stafford Noble

PLoS Comput Biol· July 2010

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Factors associated with time to identify physical problems of nursing home residents with dementia.
Christine R Kovach, Brent R Logan, Michelle R Simpson, Sheila Reynolds

Am J Alzheimers Dis Other Demen· June 2010

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Transmembrane topology and signal peptide prediction using dynamic bayesian networks.
Sheila M Reynolds, Lukas Käll, Michael E Riffle, Jeff A Bilmes, William Stafford Noble

PLoS Comput Biol· November 2008

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Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.
Aaron A Klammer, Sheila M Reynolds, Jeff A Bilmes, Michael J MacCoss, William Stafford Noble

Bioinformatics· July 2008

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Mesolimbic dopamine in desire and dread: enabling motivation to be generated by localized glutamate disruptions in nucleus accumbens.
Alexis Faure, Sheila M Reynolds, Jocelyn M Richard, Kent C Berridge

J Neurosci· July 2008

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Emotional environments retune the valence of appetitive versus fearful functions in nucleus accumbens.
Sheila M Reynolds, Kent C Berridge

Nat Neurosci· April 2008

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Independent and complementary methods for large-scale structural analysis of mammalian chromatin.
Jonathan H Dennis, Hua-Ying Fan, Sheila M Reynolds, Guocheng Yuan, James C Meldrim

Genome Res· June 2007

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Reliability of the 7-Day Physical Activity Recall in a Biracial Group of Inactive and Active Adults.
Leslie A Pruitt, Abby C King, Eva Obarzanek, Michael Miller, Mary O'Toole, Sheila Reynolds

J Phys Act Health· October 2006

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