Publications by authors named "Steven Lakin"

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Experimental Infection of Bundibugyo Virus in Domestic Swine Leads to Viral Shedding with Evidence of Intraspecies Transmission.
Charles E Lewis, Mathieu M Pinette, Steven M Lakin, Greg Smith, Mathew Fisher

Transbound Emerg Dis· April 2025

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Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle in the United States.
Thao-Quyen Nguyen, Carl R Hutter, Alexey Markin, Megan Thomas, Kristina Lantz, Steven M Lakin

Science· April 2025

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Direct RNA Sequencing of Foot-and-mouth Disease Virus Genome Using a Flongle on MinION.
Lizhe Xu, Amy Berninger, Steven M Lakin, Vivian O'Donnell, Jim L Pierce

Bio Protoc· June 2024

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Rapid Detection and Quick Characterization of African Swine Fever Virus Using the VolTRAX Automated Library Preparation Platform.
Vivian O'Donnell, Jim L Pierce, Oleg Osipenko, Lizhe Xu, Amy Berninger, Steven M Lakin

Viruses· May 2024

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Coding-complete genome sequences of rabbit hemorrhagic disease virus type 2 detected in 2023 in Washington State indicate a divergent incursion into the United States.
Steven J Pauszek, Kaitlyn Waters, Fawzi Mohamed, Steven M Lakin, Karen Moran

Microbiol Resour Announc· April 2024

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Co-Circulating Monkeypox and Swinepox Viruses, Democratic Republic of the Congo, 2022.
Thierry Kalonji, Emile Malembi, Jean Paul Matela, Toutou Likafi, Eddy Kinganda-Lusamaki, Steven Lakin

Emerg Infect Dis· April 2024

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Domestic pigs are susceptible to experimental infection with non-human primate-derived Reston virus without the need for adaptation.
Charles E Lewis, Mathieu M Pinette, Steven M Lakin, Greg Smith, Mathew Fisher

Sci Rep· January 2024

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Whole Genome Sequencing Shows that African Swine Fever Virus Genotype IX Is Still Circulating in Domestic Pigs in All Regions of Uganda.
Rodney Okwasiimire, Joseph F Flint, Edrine B Kayaga, Steven Lakin, Jim Pierce

Pathogens· July 2023

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Demographic and histopathologic features of dogs with abnormally high concentrations of hepatic copper.
Tarini Vedantham Ullal, Steven Lakin, Brooke Gallagher, Nick Sbardellati, Zaid Abdo

J Vet Intern Med· November 2022

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Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.
Adelumola Oladeinde, Zaid Abdo, Benjamin Zwirzitz, Reed Woyda, Steven M Lakin

Appl Environ Microbiol· May 2022

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Erratum for Oladeinde et al., "Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg".
Adelumola Oladeinde, Zaid Abdo, Maximilian O Press, Kimberly Cook, Nelson A Cox, Steven M Lakin

mSystems· October 2021

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Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg.
Adelumola Oladeinde, Zaid Abdo, Maximilian O Press, Kimberly Cook, Nelson A Cox, Steven M Lakin

mSystems· August 2021

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Complete Genome Sequences of Eight Streptococcus equi subsp. Strains Isolated from Mares in Estrus with Endometritis.
Grace I Borlee, Steven M Lakin, Marylee L Kapuscinski, Zaid Abdo, Mark D Stenglein

Microbiol Resour Announc· July 2021

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Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg.
Maite Ghazaleh Bucher, Benjamin Zwirzitz, Adelumola Oladeinde, Kimberly Cook, Caroline Plymel, Steven Lakin

J Environ Qual· July 2020

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Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.
Steven M Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle R Noyes, Chris Dean

Commun Biol· April 2020

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MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data.
Enrique Doster, Steven M Lakin, Christopher J Dean, Cory Wolfe, Jared G Young

Nucleic Acids Res· January 2020

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Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following Incubation in Broiler Ceca.
Adelumola Oladeinde, Kimberly Cook, Steven M Lakin, Reed Woyda, Zaid Abdo

Appl Environ Microbiol· November 2019

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Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production Systems.
Pablo Rovira, Tim McAllister, Steven M Lakin, Shaun R Cook, Enrique Doster

Front Microbiol· September 2019

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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent.
Rahat Zaheer, Steven M Lakin, Rodrigo Ortega Polo, Shaun R Cook, Francis J Larney

BMC Microbiol· August 2019

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Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics.
Katherine L Huebner, Jennifer N Martin, Carla J Weissend, Katlyn L Holzer, Jennifer K Parker, Steven M Lakin

Sci Rep· February 2019

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Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period.
Enrique Doster, Pablo Rovira, Noelle R Noyes, Brandy A Burgess, Xiang Yang, Steven M Lakin

Front Microbiol· July 2018

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Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing.
Noelle R Noyes, Maggie E Weinroth, Jennifer K Parker, Chris J Dean, Steven M Lakin

Microbiome· October 2017

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MEGARes: an antimicrobial resistance database for high throughput sequencing.
Steven M Lakin, Chris Dean, Noelle R Noyes, Adam Dettenwanger, Anne Spencer Ross

Nucleic Acids Res· January 2017

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West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses.
Joseph R Fauver, Nathan D Grubaugh, Benjamin J Krajacich, James Weger-Lucarelli, Steven M Lakin

Virology· November 2016

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