Publications by authors named "Stian Soiland-Reyes"

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WorkflowHub: a registry for computational workflows.
Ove Johan Ragnar Gustafsson, Sean R Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo

Sci Data· May 2025

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Applying the FAIR Principles to computational workflows.
Sean R Wilkinson, Meznah Aloqalaa, Khalid Belhajjame, Michael R Crusoe, Bruno de Paula Kinoshita, Stian Soiland-Reyes

Sci Data· February 2025

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Recording provenance of workflow runs with RO-Crate.
Simone Leo, Michael R Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Stian Soiland-Reyes

PLoS One· September 2024

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Evaluating FAIR Digital Object and Linked Data as distributed object systems.
Stian Soiland-Reyes, Carole Goble, Paul Groth

PeerJ Comput Sci· April 2024

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Toward a common standard for data and specimen provenance in life sciences.
Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müller, Stian Soiland-Reyes

Learn Health Syst· January 2024

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Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment.
Marjan Meurisse, Francisco Estupiñán-Romero, Javier González-Galindo, Natalia Martínez-Lizaga, Santiago Royo-Sierra, Stian Soiland-Reyes

BMC Med Res Methodol· October 2023

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Ten simple rules for making a software tool workflow-ready.
Paul Brack, Peter Crowther, Stian Soiland-Reyes, Stuart Owen, Douglas Lowe

PLoS Comput Biol· March 2022

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Perspectives on automated composition of workflows in the life sciences.
Anna-Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Stian Soiland-Reyes

F1000Res· December 2021

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Semantic micro-contributions with decentralized nanopublication services.
Tobias Kuhn, Ruben Taelman, Vincent Emonet, Haris Antonatos, Stian Soiland-Reyes

PeerJ Comput Sci· March 2021

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Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.
Farah Zaib Khan, Stian Soiland-Reyes, Richard O Sinnott, Andrew Lonie, Carole Goble

Gigascience· November 2019

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BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.
Pau Andrio, Adam Hospital, Javier Conejero, Luis Jordá, Marc Del Pino, Stian Soiland-Reyes

Sci Data· September 2019

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Enabling precision medicine via standard communication of HTS provenance, analysis, and results.
Gil Alterovitz, Dennis Dean, Carole Goble, Michael R Crusoe, Stian Soiland-Reyes

PLoS Biol· December 2018

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Stian Soiland-Reyes

PLoS Biol· June 2017

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FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
Katherine Wolstencroft, Olga Krebs, Jacky L Snoep, Natalie J Stanford, Finn Bacall, Stian Soiland-Reyes

Nucleic Acids Res· January 2017

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Community-driven development for computational biology at Sprints, Hackathons and Codefests.
Steffen Möller, Enis Afgan, Michael Banck, Raoul J P Bonnal, Timothy Booth, Stian Soiland-Reyes

BMC Bioinformatics· April 2015

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COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
Frank T Bergmann, Richard Adams, Stuart Moodie, Jonathan Cooper, Mihai Glont, Stian Soiland-Reyes

BMC Bioinformatics· December 2014

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Structuring research methods and data with the research object model: genomics workflows as a case study.
Kristina M Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes

J Biomed Semantics· October 2014

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PAV ontology: provenance, authoring and versioning.
Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair Jg Gray, Carole Goble

J Biomed Semantics· November 2013

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The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Katherine Wolstencroft, Robert Haines, Donal Fellows, Alan Williams, David Withers, Stian Soiland-Reyes

Nucleic Acids Res· July 2013

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CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.
Wei Tan, Ravi Madduri, Alexandra Nenadic, Stian Soiland-Reyes, Dinanath Sulakhe

BMC Bioinformatics· November 2010

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Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
Peter Li, Juan I Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes

BMC Bioinformatics· August 2008

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