Publications by authors named "Thomas Royce"

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Addendum: The value of comprehensive genomic sequencing to maximize the identification of clinically actionable alterations in advanced cancer patients: a case series.
Kevin Drenner, Gargi D Basu, Laurie J Goodman, Audrey A Ozols, Janine R LoBello, Thomas Royce

Oncotarget· October 2022

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The value of comprehensive genomic sequencing to maximize the identification of clinically actionable alterations in advanced cancer patients: a case series.
Kevin Drenner, Gargi D Basu, Laurie J Goodman, Audrey A Ozols, Janine R LoBello, Thomas Royce

Oncotarget· August 2021

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Analytic validation and clinical utilization of the comprehensive genomic profiling test, GEM ExTra.
Tracey White, Szabolcs Szelinger, Janine LoBello, Amy King, Jessica Aldrich, Thomas Royce

Oncotarget· April 2021

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A novel CLTC-FOSB gene fusion in pseudomyogenic hemangioendothelioma of bone.
Julia A Bridge, Janos Sumegi, Thomas Royce, Michael Baker, Konstantinos Linos

Genes Chromosomes Cancer· January 2021

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Epithelioid Fibrous Histiocytoma With Dot-Like Perinuclear ALK Expression and PRKAR2A-ALK Fusion.
Kellen Dawson, Julia A Bridge, Janos Sumegi, Thomas Royce, Jerad M Gardner

Am J Dermatopathol· November 2020

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A novel case of an aggressive superficial spindle cell sarcoma in an adult resembling fibrosarcomatous dermatofibrosarcoma protuberans and harboring an EML4-NTRK3 fusion.
Nicholas Olson, Omid Rouhi, Linsheng Zhang, Christina Angeles, Julia Bridge, Thomas Royce

J Cutan Pathol· December 2018

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Micrometastatic gastric glomus tumour confirmed by next-generation sequencing.
John Davis, Matthew Petterson, James Newell, Gregory Y Lauwers, Thomas Royce

Histopathology· January 2018

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Sequences of 95 human haplotypes reveal extreme coding variation in genes other than highly polymorphic and .
Paul J Norman, Steven J Norberg, Lisbeth A Guethlein, Neda Nemat-Gorgani, Thomas Royce

Genome Res· May 2017

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Canvas: versatile and scalable detection of copy number variants.
Eric Roller, Sergii Ivakhno, Steve Lee, Thomas Royce, Stephen Tanner

Bioinformatics· August 2016

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Very long haplotype tracts characterized at high resolution from HLA homozygous cell lines.
Paul J Norman, Steve J Norberg, Neda Nemat-Gorgani, Thomas Royce, Jill A Hollenbach

Immunogenetics· September 2015

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Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.
Craig April, Brandy Klotzle, Thomas Royce, Eliza Wickham-Garcia, Tanya Boyaniwsky

PLoS One· December 2009

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Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.
Michael Seringhaus, Joel Rozowsky, Thomas Royce, Ugrappa Nagalakshmi, Justin Jee

BMC Genomics· December 2008

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Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer.
Sunita R Setlur, Thomas E Royce, Andrea Sboner, Juan-Miguel Mosquera, Francesca Demichelis

Cancer Res· November 2007

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Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
Thomas E Royce, Joel S Rozowsky, Mark B Gerstein

Nucleic Acids Res· October 2007

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Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome.
Jan O Korbel, Alexander Eckehart Urban, Fabian Grubert, Jiang Du, Thomas E Royce

Proc Natl Acad Sci U S A· June 2007

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An efficient pseudomedian filter for tiling microrrays.
Thomas E Royce, Nicholas J Carriero, Mark B Gerstein

BMC Bioinformatics· June 2007

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Immunity against Ixodes scapularis salivary proteins expressed within 24 hours of attachment thwarts tick feeding and impairs Borrelia transmission.
Sukanya Narasimhan, Kathleen Deponte, Nancy Marcantonio, Xianping Liang, Thomas E Royce

PLoS One· May 2007

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Assessing the need for sequence-based normalization in tiling microarray experiments.
Thomas E Royce, Joel S Rozowsky, Mark B Gerstein

Bioinformatics· April 2007

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Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.
Thomas E Royce, Joel S Rozowsky, Nicholas M Luscombe, Olof Emanuelsson, Haiyuan Yu

Methods Enzymol· December 2006

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A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
Jiang Du, Joel S Rozowsky, Jan O Korbel, Zhengdong D Zhang, Thomas E Royce

Bioinformatics· December 2006

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Global changes in STAT target selection and transcription regulation upon interferon treatments.
Stephen E Hartman, Paul Bertone, Anjali K Nath, Thomas E Royce, Mark Gerstein

Genes Dev· December 2005

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Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.
Thomas E Royce, Joel S Rozowsky, Paul Bertone, Manoj Samanta, Viktor Stolc

Trends Genet· August 2005

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Global identification of human transcribed sequences with genome tiling arrays.
Paul Bertone, Viktor Stolc, Thomas E Royce, Joel S Rozowsky, Alexander E Urban

Science· December 2004

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DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.
Eric J White, Olof Emanuelsson, David Scalzo, Thomas Royce, Steven Kosak

Proc Natl Acad Sci U S A· December 2004

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Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.
Ursula Lehnert, Yu Xia, Thomas E Royce, Chem-Sing Goh, Yang Liu

Q Rev Biophys· May 2004

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