Publications by authors named "Timothee Lionnet"

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BeadBuddy: user-friendly, nanometer-scale registration of single-molecule imaging data.
Finnegan T Clark, Peter H Whitney, Néstor Saiz, Angelina Ziarno, Timothée Lionnet

bioRxiv· November 2025

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Identifying in vivo genetic dependencies of melanocyte and melanoma development.
Sarah Perlee, Yilun Ma, Miranda V Hunter, Jacob B Swanson, Nelly M Cruz, Timothee Lionnet

Elife· August 2025

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De novo assembly of RNA mA modification factors into viral genome-associated nuclear bodies drives HCMV RNA accumulation.
Rebecca C Grande, Chia-Ching Lin, Michael Cammer, Ebube D Emesom, Maaz Asher Khurram, Timothée Lionnet

Cell Rep· July 2025

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Identifying genetic dependencies of melanocyte and melanoma development.
Sarah Perlee, Yilun Ma, Miranda V Hunter, Jacob B Swanson, Nelly M Cruz, Timothée Lionnet

bioRxiv· May 2025

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The method in the madness: Transcriptional control from stochastic action at the single-molecule scale.
Peter H Whitney, Timothée Lionnet

Curr Opin Struct Biol· August 2024

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Clonal evolution of the 3D chromatin landscape in patients with relapsed pediatric B-cell acute lymphoblastic leukemia.
Sonali Narang, Yohana Ghebrechristos, Nikki A Evensen, Nina Murrell, Sylwia Jasinski, Timothee Lionnet

Nat Commun· August 2024

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Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations.
Yi Fu, Tianxiao Zhao, Finnegan Clark, Sofia Nomikou, Aristotelis Tsirigos, Timothée Lionnet

bioRxiv· July 2024

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Cellular adaptation to cancer therapy along a resistance continuum.
Gustavo S França, Maayan Baron, Benjamin R King, Jozef P Bossowski, Alicia Bjornberg, Timothée Lionnet

Nature· July 2024

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Integrator-mediated clustering of poised RNA polymerase II synchronizes histone transcription.
Feiyue Lu, Brandon J Park, Rina Fujiwara, Jeremy E Wilusz, David S Gilmour, Timothée Lionnet

bioRxiv· January 2024

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A universal deep-learning model for zinc finger design enables transcription factor reprogramming.
David M Ichikawa, Osama Abdin, Nader Alerasool, Manjunatha Kogenaru, April L Mueller, Timothee Lionnet

Nat Biotechnol· August 2023

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RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Ella Bahry, Laura Breimann, Marwan Zouinkhi, Leo Epstein, Klim Kolyvanov, Timothée Lionnet

Nat Methods· December 2022

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Synthetic regulatory reconstitution reveals principles of mammalian cluster regulation.
Sudarshan Pinglay, Milica Bulajić, Dylan P Rahe, Emily Huang, Ran Brosh, Timothée Lionnet

Science· July 2022

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Single-cell transcriptomics identifies Gadd45b as a regulator of herpesvirus-reactivating neurons.
Hui-Lan Hu, Kalanghad P Srinivas, Shuoshuo Wang, Moses V Chao, Timothee Lionnet

EMBO Rep· February 2022

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Transcription Factor Dynamics.
Feiyue Lu, Timothée Lionnet

Cold Spring Harb Perspect Biol· November 2021

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Spatiotemporal coordination of transcription preinitiation complex assembly in live cells.
Vu Q Nguyen, Anand Ranjan, Sheng Liu, Xiaona Tang, Yick Hin Ling, Timothée Lionnet

Mol Cell· September 2021

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Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin.
Jee Min Kim, Pat Visanpattanasin, Vivian Jou, Sheng Liu, Xiaona Tang, Timothee Lionnet

Elife· July 2021

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Single-molecule tracking of transcription protein dynamics in living cells: seeing is believing, but what are we seeing?
Timothée Lionnet, Carl Wu

Curr Opin Genet Dev· April 2021

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Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia.
Andreas Kloetgen, Palaniraja Thandapani, Panagiotis Ntziachristos, Yohana Ghebrechristos, Sofia Nomikou, Timothee Lionnet

Nat Genet· April 2020

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Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction.
Anand Ranjan, Vu Q Nguyen, Sheng Liu, Jan Wisniewski, Jee Min Kim, Timothee Lionnet

Elife· April 2020

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Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis.
Yuko Sato, Lennart Hilbert, Haruka Oda, Yinan Wan, John M Heddleston, Timothee Lionnet

Development· September 2019

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Single-Molecule Sensitivity RNA FISH Analysis of Influenza Virus Genome Trafficking.
Yi-Ying Chou, Timothée Lionnet

Methods Mol Biol· April 2019

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Imaging the Life and Death of mRNAs in Single Cells.
Jeffrey A Chao, Timothée Lionnet

Cold Spring Harb Perspect Biol· December 2018

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Synthesis of Janelia Fluor HaloTag and SNAP-Tag Ligands and Their Use in Cellular Imaging Experiments.
Jonathan B Grimm, Timothy A Brown, Brian P English, Timothée Lionnet, Luke D Lavis

Methods Mol Biol· May 2018

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Quantitative mRNA imaging throughout the entire Drosophila brain.
Xi Long, Jennifer Colonell, Allan M Wong, Robert H Singer, Timothée Lionnet

Nat Methods· July 2017

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mRNA quantification using single-molecule FISH in Drosophila embryos.
Tatjana Trcek, Timothée Lionnet, Hari Shroff, Ruth Lehmann

Nat Protoc· July 2017

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