Publications by authors named "Ursula Kummer"

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Differential regulation of calcium-activated plant kinases in Arabidopsis thaliana.
Martin Zauser, Anja Liese, Anna Feldman-Salit, Melanie Krebs, Karin Schumacher, Ursula Kummer

Plant J· September 2025

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A comparative computational analysis of IFN-alpha pharmacokinetics and its induced cellular response in mice and humans.
Priyata Kalra, Bastian Kister, Rebekka Fendt, Mario Köster, Julia Pulverer, Ursula Kummer

PLoS Comput Biol· September 2025

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Comparing genome-scale metabolic models of the non-resistant Enterococcus faecalis ATCC 19433 and the multi-resistant Enterococcus faecalis V583.
Seyed Babak Loghmani, Eric Zitzow, Luisa Schwarzmüller, Yvonne Humboldt, Philip Eisenberg, Ursula Kummer

J Biotechnol· September 2024

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The pH-dependent lactose metabolism of Lactobacillus delbrueckii subsp. bulgaricus: An integrative view through a mechanistic computational model.
Tamara Bendig, Andreas Ulmer, Laura Luzia, Susanne Müller, Sven Sahle, Ursula Kummer

J Biotechnol· September 2023

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Spatial modeling reveals nuclear phosphorylation and subcellular shuttling of YAP upon drug-induced liver injury.
Lilija Wehling, Liam Keegan, Paula Fernández-Palanca, Reham Hassan, Ahmed Ghallab, Ursula Kummer

Elife· October 2022

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Stochastic dynamics of Type-I interferon responses.
Benjamin D Maier, Luis U Aguilera, Sven Sahle, Pascal Mutz, Priyata Kalra, Ursula Kummer

PLoS Comput Biol· October 2022

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Computational modeling and quantitative physiology reveal central parameters for brassinosteroid-regulated early cell physiological processes linked to elongation growth of the root.
Ruth Großeholz, Friederike Wanke, Leander Rohr, Nina Glöckner, Luiselotte Rausch, Ursula Kummer

Elife· September 2022

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All Driven by Energy Demand? Integrative Comparison of Metabolism of Enterococcus faecalis Wildtype and a Glutamine Synthase Mutant.
Seyed Babak Loghmani, Eric Zitzow, Gene Ching Chiek Koh, Andreas Ulmer, Nadine Veith, Ursula Kummer

Microbiol Spectr· April 2022

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Inspecting the Solution Space of Genome-Scale Metabolic Models.
Seyed Babak Loghmani, Nadine Veith, Sven Sahle, Frank T Bergmann, Brett G Olivier, Ursula Kummer

Metabolites· January 2022

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An integrative view on vacuolar pH homeostasis in Arabidopsis thaliana: Combining mathematical modeling and experimentation.
Pascal Holzheu, Melanie Krebs, Catharina Larasati, Karin Schumacher, Ursula Kummer

Plant J· June 2021

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Protein cost allocation explains metabolic strategies in Escherichia coli.
Pranas Grigaitis, Brett G Olivier, Tomas Fiedler, Bas Teusink, Ursula Kummer

J Biotechnol· February 2021

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Impact of explicit area scaling on kinetic models involving multiple compartments.
Pascal Holzheu, Ruth Großeholz, Ursula Kummer

BMC Bioinformatics· January 2021

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miRNA target identification and prediction as a function of time in gene expression data.
Pranas Grigaitis, Vytaute Starkuviene, Ursula Rost, Andrius Serva, Pascal Pucholt, Ursula Kummer

RNA Biol· July 2020

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Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling.
Ruth Großeholz, Anna Feldman-Salit, Friederike Wanke, Sarina Schulze, Nina Glöckner, Ursula Kummer

J Integr Plant Biol· April 2020

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Computational systems biology of cellular processes in Arabidopsis thaliana: an overview.
Pascal Holzheu, Ursula Kummer

Cell Mol Life Sci· February 2020

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Quantitative systems pharmacology of interferon alpha administration: A multi-scale approach.
Priyata Kalra, Julian Brandl, Thomas Gaub, Christoph Niederalt, Jörg Lippert, Ursula Kummer

PLoS One· November 2019

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Distribution of control in the sulfur assimilation in Arabidopsis thaliana depends on environmental conditions.
Anna Feldman-Salit, Nadine Veith, Markus Wirtz, Rüdiger Hell, Ursula Kummer

New Phytol· May 2019

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Robustness of frequency vs. amplitude coding of calcium oscillations during changing temperatures.
Luis Aguilera, Frank T Bergmann, Giovanni Dalmasso, Sinan Elmas, Tobias Elsässer, Ursula Kummer

Biophys Chem· February 2019

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Advances and current challenges in calcium signaling.
Jörg Kudla, Dirk Becker, Erwin Grill, Rainer Hedrich, Michael Hippler, Ursula Kummer

New Phytol· April 2018

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COPASI and its applications in biotechnology.
Frank T Bergmann, Stefan Hoops, Brian Klahn, Ursula Kummer, Pedro Mendes

J Biotechnol· November 2017

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A20/TNFAIP3 Discriminates Tumor Necrosis Factor (TNF)-Induced NF-κB from JNK Pathway Activation in Hepatocytes.
Federico Pinna, Michaela Bissinger, Katharina Beuke, Nicolas Huber, Thomas Longerich, Ursula Kummer

Front Physiol· August 2017

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Quantitative and integrative analysis of paracrine hepatocyte activation by nonparenchymal cells upon lipopolysaccharide induction.
Katharina Beuke, Frank A Schildberg, Federico Pinna, Ute Albrecht, Roman Liebe, Ursula Kummer

FEBS J· March 2017

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A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study.
Luis U Aguilera, Christoph Zimmer, Ursula Kummer

BMC Syst Biol· February 2017

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Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen .
Ruth Großeholz, Ching-Chiek Koh, Nadine Veith, Tomas Fiedler, Madlen Strauss, Ursula Kummer

NPJ Syst Biol Appl· September 2016

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Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
Marija Cvijovic, Thomas Höfer, Jure Aćimović, Lilia Alberghina, Eivind Almaas, Ursula Kummer

NPJ Syst Biol Appl· May 2016

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