Publications by authors named "Zoltan Simandi"

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Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation.
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins

Cell Genom· August 2024

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A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations.
Harshini Chandrashekar, Zoltan Simandi, Heesun Choi, Han-Seul Ryu, Abraham J Waldman

bioRxiv· February 2024

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Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation.
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins

bioRxiv· December 2023

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3D genome, on repeat: Higher-order folding principles of the heterochromatinized repetitive genome.
Spencer A Haws, Zoltan Simandi, R Jordan Barnett, Jennifer E Phillips-Cremins

Cell· July 2022

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Cohesin-mediated loop anchors confine the locations of human replication origins.
Daniel J Emerson, Peiyao A Zhao, Ashley L Cook, R Jordan Barnett, Kyle N Klein, Zoltan Simandi

Nature· June 2022

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A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
Andreas Patsalos, Laszlo Halasz, Miguel A Medina-Serpas, Wilhelm K Berger, Bence Daniel, Zoltan Simandi

J Exp Med· January 2022

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Diet-dependent natriuretic peptide receptor C expression in adipose tissue is mediated by PPARγ via long-range distal enhancers.
Fubiao Shi, Zoltan Simandi, Laszlo Nagy, Sheila Collins

J Biol Chem· August 2021

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Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.
Lina Fadel, Bálint Rehó, Julianna Volkó, Dóra Bojcsuk, Zsuzsanna Kolostyák, Zoltan Simandi

J Biol Chem· July 2020

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Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.
Attila Horvath, Bence Daniel, Lajos Szeles, Ixchelt Cuaranta-Monroy, Zsolt Czimmerer, Zoltan Simandi

Nucleic Acids Res· April 2019

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In vivo GDF3 administration abrogates aging related muscle regeneration delay following acute sterile injury.
Andreas Patsalos, Zoltan Simandi, Tristan T Hays, Matthew Peloquin, Matine Hajian

Aging Cell· October 2018

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RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.
Zoltan Simandi, Attila Horvath, Ixchelt Cuaranta-Monroy, Sascha Sauer, Jean-Francois Deleuze

Mol Cell Endocrinol· August 2018

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Arginine Methyltransferase PRMT8 Provides Cellular Stress Tolerance in Aging Motoneurons.
Zoltan Simandi, Krisztian Pajer, Katalin Karolyi, Tatiana Sieler, Lu-Lin Jiang

J Neurosci· August 2018

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The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
Zsolt Czimmerer, Bence Daniel, Attila Horvath, Dominik Rückerl, Gergely Nagy, Zoltan Simandi

Immunity· January 2018

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The Role of DNA Polymerase β in Neural Genome Stability.
Zoltan Simandi

J Neurosci· November 2017

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Nucleosome stability measured in situ by automated quantitative imaging.
László Imre, Zoltán Simándi, Attila Horváth, György Fenyőfalvi, Péter Nánási

Sci Rep· October 2017

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Commentaries on Viewpoint: Loopomics: a new functional approach to life.
Attila Horvath, Zoltan Simandi, Laszlo Nagy, Peter L M Kerkhof, Volker Perlitz

J Appl Physiol (1985)· October 2017

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Differentiation of Adipocytes in Monolayer from Mouse Embryonic Stem Cells.
Ixchelt Cuaranta-Monroy, Zoltan Simandi, Laszlo Nagy

Methods Mol Biol· August 2016

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OCT4 Acts as an Integrator of Pluripotency and Signal-Induced Differentiation.
Zoltan Simandi, Attila Horvath, Lyndsey C Wright, Ixchelt Cuaranta-Monroy, Isabella De Luca

Mol Cell· August 2016

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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation.
Zoltan Simandi, Attila Horvath, Peter Nagy, Laszlo Nagy

J Vis Exp· June 2016

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Genomewide effects of peroxisome proliferator-activated receptor gamma in macrophages and dendritic cells--revealing complexity through systems biology.
Ixchelt Cuaranta-Monroy, Mate Kiss, Zoltan Simandi, Laszlo Nagy

Eur J Clin Invest· September 2015

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PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology.
Zoltan Simandi, Erik Czipa, Attila Horvath, Aron Koszeghy, Csilla Bordas

Stem Cells· March 2015

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Highly efficient differentiation of embryonic stem cells into adipocytes by ascorbic acid.
Ixchelt Cuaranta-Monroy, Zoltan Simandi, Zsuzsanna Kolostyak, Quang-Minh Doan-Xuan, Szilard Poliska

Stem Cell Res· July 2014

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Nuclear receptors as regulators of stem cell and cancer stem cell metabolism.
Zoltan Simandi, Ixchelt Cuaranta-Monroy, Laszlo Nagy

Semin Cell Dev Biol· December 2013

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A versatile method to design stem-loop primer-based quantitative PCR assays for detecting small regulatory RNA molecules.
Zsolt Czimmerer, Julianna Hulvely, Zoltan Simandi, Eva Varallyay, Zoltan Havelda

PLoS One· July 2013

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Activation of retinoic acid receptor signaling coordinates lineage commitment of spontaneously differentiating mouse embryonic stem cells in embryoid bodies.
Zoltan Simandi, Balint Laszlo Balint, Szilard Poliska, Ralph Ruhl, Laszlo Nagy

FEBS Lett· July 2010

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