Publications by authors named "Allyson Byrd"

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Building a blueprint for intra-tumoral microbial studies.
Jayanth Jawahar, Allyson L Byrd

Nat Med· November 2025

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Toxigenic Clostridium perfringens Isolated from At-Risk Paediatric Inflammatory Bowel Disease Patients.
James Kuo, Jasmina Uzunovic, Amanda Jacobson, Michelle Dourado, Sarah Gierke, Allyson L Byrd

J Crohns Colitis· August 2024

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Melanoma and microbiota: Current understanding and future directions.
Bertrand Routy, Tanisha Jackson, Laura Mählmann, Christina K Baumgartner, Martin Blaser, Allyson Byrd

Cancer Cell· January 2024

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Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype.
Brett S Younginger, Oleg Mayba, Jens Reeder, Deepti R Nagarkar, Zora Modrusan, Allyson L Byrd

Cell Rep Med· February 2023

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Biomarker Technologies to Support Early Clinical Immuno-oncology Development: Advances and Interpretation.
Michael A Cannarile, Bruno Gomes, Marta Canamero, Bernhard Reis, Allyson Byrd

Clin Cancer Res· August 2021

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Microbial genetic and transcriptional contributions to oxalate degradation by the gut microbiota in health and disease.
Menghan Liu, Joseph C Devlin, Jiyuan Hu, Angelina Volkova, Thomas W Battaglia, Allyson Byrd

Elife· March 2021

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Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers.
Allyson L Byrd, Menghan Liu, Kei E Fujimura, Svetlana Lyalina, Deepti R Nagarkar

J Exp Med· January 2021

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A antibiotic modulates human skin microbiota composition in hair follicles.
Jan Claesen, Jennifer B Spagnolo, Stephany Flores Ramos, Kenji L Kurita, Allyson L Byrd

Sci Transl Med· November 2020

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A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.
Petar Scepanovic, Flavia Hodel, Stanislas Mondot, Valentin Partula, Allyson Byrd

Microbiome· September 2019

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Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury.
Oliver J Harrison, Jonathan L Linehan, Han-Yu Shih, Nicolas Bouladoux, Seong-Ji Han, Allyson L Byrd

Science· January 2019

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Contextual control of skin immunity and inflammation by .
Vanessa K Ridaura, Nicolas Bouladoux, Jan Claesen, Y Erin Chen, Allyson L Byrd

J Exp Med· March 2018

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Non-classical Immunity Controls Microbiota Impact on Skin Immunity and Tissue Repair.
Jonathan L Linehan, Oliver J Harrison, Seong-Ji Han, Allyson L Byrd, Ivan Vujkovic-Cvijin

Cell· February 2018

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White Adipose Tissue Is a Reservoir for Memory T Cells and Promotes Protective Memory Responses to Infection.
Seong-Ji Han, Arielle Glatman Zaretsky, Vinicius Andrade-Oliveira, Nicholas Collins, Amiran Dzutsev, Allyson L Byrd

Immunity· December 2017

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and strain diversity underlying pediatric atopic dermatitis.
Allyson L Byrd, Clay Deming, Sara K B Cassidy, Oliver J Harrison, Weng-Ian Ng

Sci Transl Med· July 2017

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Temporal Stability of the Human Skin Microbiome.
Julia Oh, Allyson L Byrd, Morgan Park, , Heidi H Kong

Cell· May 2016

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Infectious disease. Adapting Koch's postulates.
Allyson L Byrd, Julia A Segre

Science· January 2016

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Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity.
Denise Morais da Fonseca, Timothy W Hand, Seong-Ji Han, Michael Y Gerner, Arielle Glatman Zaretsky, Allyson L Byrd

Cell· October 2015

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Elucidating microbial codes to distinguish individuals.
Allyson L Byrd, Julia A Segre

Proc Natl Acad Sci U S A· June 2015

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Bone-Marrow-Resident NK Cells Prime Monocytes for Regulatory Function during Infection.
Michael H Askenase, Seong-Ji Han, Allyson L Byrd, Denise Morais da Fonseca, Nicolas Bouladoux

Immunity· June 2015

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Commensal-dendritic-cell interaction specifies a unique protective skin immune signature.
Shruti Naik, Nicolas Bouladoux, Jonathan L Linehan, Seong-Ji Han, Oliver J Harrison, Allyson L Byrd

Nature· April 2015

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Integrating host gene expression and the microbiome to explore disease pathogenesis.
Allyson L Byrd, Julia A Segre

Genome Biol· April 2015

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Biogeography and individuality shape function in the human skin metagenome.
Julia Oh, Allyson L Byrd, Clay Deming, Sean Conlan,

Nature· October 2014

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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples.
Changjin Hong, Solaiappan Manimaran, Ying Shen, Joseph F Perez-Rogers, Allyson L Byrd

Microbiome· September 2014

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Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.
Allyson L Byrd, Joseph F Perez-Rogers, Solaiappan Manimaran, Eduardo Castro-Nallar, Ian Toma

BMC Bioinformatics· August 2014

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