Publications by authors named "Charlie Strauss"

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Protein remote homology detection and structural alignment using deep learning.
Tymor Hamamsy, James T Morton, Robert Blackwell, Daniel Berenberg, Nicholas Carriero, Charlie E M Strauss

Nat Biotechnol· June 2024

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Label-free affinity screening, design and synthesis of inhibitors targeting the Mycobacterium tuberculosis L-alanine dehydrogenase.
Heung-Bok Kim, John-Paul Bacik, Ruilian Wu, Ramesh K Jha, Michaeline Hebron, Charlie E M Strauss

PLoS One· November 2022

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Conformational control sequence for a heteropeptoid in water: coupled NMR and Rosetta modelling.
Trideep Rajale, Jacob C Miner, Ryszard Michalczyk, M Lisa Phipps, Jurgen G Schmidt, Charlie E M Strauss

Chem Commun (Camb)· September 2021

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Engineered pH-Sensitive Protein G/IgG Interaction.
Ramesh K Jha, Allison Yankey, Kalifa Shabazz, Leslie Naranjo, Sang-Min Shin, Charlie E M Strauss

ACS Chem Biol· July 2021

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Smart Microbial Cells Couple Catalysis and Sensing to Provide High-Throughput Selection of an Organophosphate Hydrolase.
Ramesh K Jha, Charlie E M Strauss

ACS Synth Biol· June 2020

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Better together: Elements of successful scientific software development in a distributed collaborative community.
Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Charlie E M Strauss

PLoS Comput Biol· May 2020

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Sensor-Enabled Alleviation of Product Inhibition in Chorismate Pyruvate-Lyase.
Ramesh K Jha, Niju Narayanan, Naresh Pandey, Jeremy M Bingen, Theresa L Kern, Charlie E M Strauss

ACS Synth Biol· April 2019

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A protocatechuate biosensor for KT2440 via promoter and protein evolution.
Ramesh K Jha, Jeremy M Bingen, Christopher W Johnson, Theresa L Kern, Payal Khanna, Charlie E M Strauss

Metab Eng Commun· June 2018

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Rapid Thermostabilization of Bacillus thuringiensis Serovar Konkukian 97-27 Dehydroshikimate Dehydratase through a Structure-Based Enzyme Design and Whole Cell Activity Assay.
Lucas B Harrington, Ramesh K Jha, Theresa L Kern, Emily N Schmidt, Gustavo M Canales, Charlie E M Strauss

ACS Synth Biol· January 2017

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A microbial sensor for organophosphate hydrolysis exploiting an engineered specificity switch in a transcription factor.
Ramesh K Jha, Theresa L Kern, Youngchang Kim, Christine Tesar, Robert Jedrzejczak, Charlie E M Strauss

Nucleic Acids Res· September 2016

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Rosetta comparative modeling for library design: Engineering alternative inducer specificity in a transcription factor.
Ramesh K Jha, Subhendu Chakraborti, Theresa L Kern, David T Fox, Charlie E M Strauss

Proteins· July 2015

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An improved Protein G with higher affinity for human/rabbit IgG Fc domains exploiting a computationally designed polar network.
Ramesh K Jha, Tiziano Gaiotto, Andrew R M Bradbury, Charlie E M Strauss

Protein Eng Des Sel· April 2014

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Exploring the sequence-function relationship in transcriptional regulation by the lac O1 operator.
Tuhin S Maity, Ramesh K Jha, Charlie E M Strauss, John Dunbar

FEBS J· July 2012

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3D structure analysis of PAKs: A clue to the rational design for affinity reagents and blockers.
Ramesh K Jha, Charlie E M Strauss

Cell Logist· April 2012

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Generalized fragment picking in Rosetta: design, protocols and applications.
Dominik Gront, Daniel W Kulp, Robert M Vernon, Charlie E M Strauss, David Baker

PLoS One· January 2012

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The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing.
P Douglas Renfrew, Gabrielle Campbell, Charlie E M Strauss, Richard Bonneau

PLoS One· January 2012

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Emergence of symmetry in homooligomeric biological assemblies.
Ingemar André, Charlie E M Strauss, David B Kaplan, Philip Bradley, David Baker

Proc Natl Acad Sci U S A· October 2008

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Deriving topology and sequence alignment for the helix skeleton in low-resolution protein density maps.
Yonggang Lu, Jing He, Charlie E M Strauss

J Bioinform Comput Biol· February 2008

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Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology.
Lars Malmström, Michael Riffle, Charlie E M Strauss, Dylan Chivian, Trisha N Davis

PLoS Biol· April 2007

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Large-scale testing of bibliome informatics using Pfam protein families.
Ana G Maguitman, Andreas Rechtsteiner, Karin Verspoor, Charlie E Strauss, Luis M Rocha

Pac Symp Biocomput· January 2007

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Prediction of beta-strand packing interactions using the signature product.
W Michael Brown, Shawn Martin, Joseph P Chabarek, Charlie Strauss, Jean-Loup Faulon

J Mol Model· February 2006

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Practical conversion from torsion space to Cartesian space for in silico protein synthesis.
Jerod Parsons, J Bradley Holmes, J Maurice Rojas, Jerry Tsai, Charlie E M Strauss

J Comput Chem· July 2005

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Protein structure prediction using Rosetta.
Carol A Rohl, Charlie E M Strauss, Kira M S Misura, David Baker

Methods Enzymol· May 2004

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Modeling structurally variable regions in homologous proteins with rosetta.
Carol A Rohl, Charlie E M Strauss, Dylan Chivian, David Baker

Proteins· May 2004

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Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.
Grant S Heffelfinger, Anthony Martino, Andrey Gorin, Ying Xu, Mark D Rintoul, Charlie E M Strauss

OMICS· August 2003

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