Publications by authors named "Craig B Lowe"

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I
Interrogating the Regulatory Function of HAQERs during Human Cortical Development.
Yashodara Abeykoon, Natalie Dzikowski, Yanting Luo, Enakshi Sinniah, Seth Weaver, Craig B Lowe

bioRxiv· December 2025

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Intraspecific sequence variation and complete genomes refine the identification of rapidly evolved regions in humans.
Yanting Luo, Riley J Mangan, Seth Weaver, Sarah A Zhao, Federica Mosti, Craig B Lowe

bioRxiv· October 2025

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Recent evolution of the developing human intestine affects metabolic and barrier functions.
Qianhui Yu, Umut Kilik, Stefano Secchia, Lukas Adam, Yu-Hwai Tsai, Craig B Lowe

Science· August 2025

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Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
Eric H Au, Seth Weaver, Anushka Katikaneni, Julia I Wucherpfennig, Yanting Luo, Craig B Lowe

G3 (Bethesda)· July 2025

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Craig B Lowe

Nature· May 2025

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Novelty versus innovation of gene regulatory elements in human evolution and disease.
Anushka Katikaneni, Craig B Lowe

Curr Opin Genet Dev· February 2025

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Genome Sequence of a Marine Threespine Stickleback () from Rabbit Slough in the Cook Inlet.
Eric H Au, Seth Weaver, Anushka Katikaneni, Julia I Wucherpfennig, Yanting Luo, Craig B Lowe

bioRxiv· February 2025

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Dysregulation of zebrin-II cell subtypes in the cerebellum is a shared feature across polyglutamine ataxia mouse models and patients.
Luke C Bartelt, Pawel M Switonski, Grażyna Adamek, Fabiana Longo, Juliana Carvalho, Craig B Lowe

Sci Transl Med· November 2024

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Craig B Lowe

bioRxiv· October 2024

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Antibody-assisted selective isolation of Purkinje cell nuclei from mouse cerebellar tissue.
Luke C Bartelt, Mouad Fakhri, Grazyna Adamek, Magdalena Trybus, Anna Samelak-Czajka, Craig B Lowe

Cell Rep Methods· July 2024

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Human-specific genetics: new tools to explore the molecular and cellular basis of human evolution.
Alex A Pollen, Umut Kilik, Craig B Lowe, J Gray Camp

Nat Rev Genet· October 2023

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Gonomics: uniting high performance and readability for genomics with Go.
Eric H Au, Christiana Fauci, Yanting Luo, Riley J Mangan, Daniel A Snellings, Craig B Lowe

Bioinformatics· August 2023

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Purkinje-Enriched snRNA-seq in SCA7 Cerebellum Reveals Zebrin Identity Loss as a Central Feature of Polyglutamine Ataxias.
Luke C Bartelt, Pawel M Switonski, Grażyna Adamek, Juliana Carvalho, Lisa A Duvick, Craig B Lowe

bioRxiv· May 2023

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An ancestral mycobacterial effector promotes dissemination of infection.
Joseph W Saelens, Mollie I Sweeney, Gopinath Viswanathan, Ana María Xet-Mull, Kristen L Jurcic Smith, Craig B Lowe

Cell· November 2022

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Adaptive sequence divergence forged new neurodevelopmental enhancers in humans.
Riley J Mangan, Fernando C Alsina, Federica Mosti, Jesús Emiliano Sotelo-Fonseca, Daniel A Snellings, Craig B Lowe

Cell· November 2022

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Evolution of stickleback spines through independent cis-regulatory changes at HOXDB.
Julia I Wucherpfennig, Timothy R Howes, Jessica N Au, Eric H Au, Garrett A Roberts Kingman, Craig B Lowe

Nat Ecol Evol· October 2022

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Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.
Alex A Pollen, Aparna Bhaduri, Madeline G Andrews, Tomasz J Nowakowski, Olivia S Meyerson, Craig B Lowe

Cell· February 2019

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Characterization of a Human-Specific Tandem Repeat Associated with Bipolar Disorder and Schizophrenia.
Janet H T Song, Craig B Lowe, David M Kingsley

Am J Hum Genet· September 2018

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Corrigendum: Detecting differential copy number variation between groups of samples.
Craig B Lowe, Nicelio Sanchez-Luege, Timothy R Howes, Shannon D Brady, Rhea R Daugherty

Genome Res· May 2018

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Detecting differential copy number variation between groups of samples.
Craig B Lowe, Nicelio Sanchez-Luege, Timothy R Howes, Shannon D Brady, Rhea R Daugherty

Genome Res· February 2018

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Feather development genes and associated regulatory innovation predate the origin of Dinosauria.
Craig B Lowe, Julia A Clarke, Allan J Baker, David Haussler, Scott V Edwards

Mol Biol Evol· January 2015

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29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome.
Craig B Lowe, David Haussler

PLoS One· February 2013

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A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Craig B Lowe

Nature· October 2011

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Three periods of regulatory innovation during vertebrate evolution.
Craig B Lowe, Manolis Kellis, Adam Siepel, Brian J Raney, Michele Clamp

Science· August 2011

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The genome of the green anole lizard and a comparative analysis with birds and mammals.
Jessica Alföldi, Federica Di Palma, Manfred Grabherr, Christina Williams, Lesheng Kong, Craig B Lowe

Nature· August 2011

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