Publications by authors named "Craig D Kaplan"

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RNA polymerase II-TFIIE-TFIIH interface functions in transcription start site selection in .
Pratik Basnet, Yunye Zhu, Irina O Vvedenskaya, Payal Arora, Staci Hammer, Craig D Kaplan

bioRxiv· November 2025

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Substitutions in RNA-binding protein Hrp1 map a potential interaction surface with the yeast RNA polymerase II elongation complex.
Moyao Wang, Payal Arora, Craig D Kaplan, David A Brow

Genetics· October 2025

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Genetic dissection of transcription start site selection by RNA Polymerase II in .
Payal Arora, Kieran F Brennan, Marcie H Warner, Craig D Kaplan

bioRxiv· October 2025

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FACT weakens the nucleosomal barrier to transcription and preserves its integrity by forming a hexasome-like intermediate.
Francesca Burgos-Bravo, Alexander B Tong, Chen Li, César Díaz-Celis, Craig D Kaplan

Mol Cell· June 2025

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Substitutions in RNA-binding protein Hrp1 map a potential interaction surface with the yeast RNA polymerase II elongation complex.
Moyao Wang, Payal Arora, Craig D Kaplan, David A Brow

bioRxiv· May 2025

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RNA Polymerase II Activity Control of Gene Expression and Involvement in Disease.
James C Kuldell, Craig D Kaplan

J Mol Biol· January 2025

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Transcription start site scanning requires the fungi-specific hydrophobic loop of Tfb3.
Chun Yang, Pratik Basnet, Samah Sharmin, Hui Shen, Craig D Kaplan

Nucleic Acids Res· October 2024

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Higher-order epistasis within Pol II trigger loop haplotypes.
Bingbing Duan, Chenxi Qiu, Steve W Lockless, Sing-Hoi Sze, Craig D Kaplan

Genetics· October 2024

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Higher-order epistasis within Pol II trigger loop haplotypes.
Bingbing Duan, Chenxi Qiu, Steve W Lockless, Sing-Hoi Sze, Craig D Kaplan

bioRxiv· September 2024

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Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Craig D Kaplan

Proc Natl Acad Sci U S A· September 2024

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Structure of the Hir histone chaperone complex.
Hee Jong Kim, Mary R Szurgot, Trevor van Eeuwen, M Daniel Ricketts, Pratik Basnet, Craig D Kaplan

Mol Cell· July 2024

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Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro.
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J Laperuta, Emily M Pavlovic, Craig D Kaplan

Nucleic Acids Res· March 2024

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Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels.
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan

Nat Struct Mol Biol· January 2024

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Structural basis of transcription: RNA Polymerase II substrate binding and metal coordination at 3.0 Å using a free-electron laser.
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Craig D Kaplan

bioRxiv· September 2023

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Mediator and Pol II go to eleven (CTD repeats).
Craig D Kaplan

Proc Natl Acad Sci U S A· May 2023

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Insufficient evidence for non-neutrality of synonymous mutations.
Leonid Kruglyak, Andreas Beyer, Joshua S Bloom, Jan Grossbach, Tami D Lieberman, Craig D Kaplan

Nature· April 2023

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Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning.
Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D Kaplan, Michael Feig

PLoS Comput Biol· March 2023

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Systematic mutagenesis of TFIIH subunit p52/Tfb2 identifies residues required for XPB/Ssl2 subunit function and genetic interactions with TFB6.
Jacob Bassett, Jenna K Rimel, Shrabani Basu, Pratik Basnet, Jie Luo, Craig D Kaplan

J Biol Chem· October 2022

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Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Chun Yang, Rina Fujiwara, Hee Jong Kim, Pratik Basnet, Yunye Zhu, Craig D Kaplan

Mol Cell· February 2022

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Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in .
Tingting Zhao, Irina O Vvedenskaya, William Km Lai, Shrabani Basu, B Franklin Pugh, Craig D Kaplan

Elife· October 2021

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A genome-wide copper-sensitized screen identifies novel regulators of mitochondrial cytochrome c oxidase activity.
Natalie M Garza, Aaron T Griffin, Mohammad Zulkifli, Chenxi Qiu, Craig D Kaplan

J Biol Chem· September 2021

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A PICture is worth a thousand words (and ten references).
Craig D Kaplan, Karen M Arndt

Cell· July 2021

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Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair.
Trevor van Eeuwen, Yoonjung Shim, Hee Jong Kim, Tingting Zhao, Shrabani Basu, Craig D Kaplan

Nat Commun· June 2021

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Germline mutation in : a heterogeneous, multi-systemic developmental disorder characterized by transcriptional dysregulation.
Adam W Hansen, Payal Arora, Michael M Khayat, Leah J Smith, Andrea M Lewis, Craig D Kaplan

HGG Adv· January 2021

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Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler.
Sarah J Hainer, Craig D Kaplan

Bioessays· July 2020

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