Publications by authors named "Dan Tawfik"

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The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase.
Orly Dym, Nidhi Aggarwal, Yacov Ashani, Haim Leader, Shira Albeck, Dan S Tawfik

Acta Crystallogr D Struct Biol· November 2023

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Allosteric regulation of the 20S proteasome by the Catalytic Core Regulators (CCRs) family.
Fanindra Kumar Deshmukh, Gili Ben-Nissan, Maya A Olshina, Maria G Füzesi-Levi, Caley Polkinghorn, Dan Tawfik

Nat Commun· May 2023

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On the Origins of Enzymes: Phosphate-Binding Polypeptides Mediate Phosphoryl Transfer to Synthesize Adenosine Triphosphate.
Pratik Vyas, Sergey Malitsky, Maxim Itkin, Dan S Tawfik

J Am Chem Soc· March 2023

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Correction to "Peptide-RNA Coacervates as a Cradle for the Evolution of Folded Domains".
Manas Seal, Orit Weil-Ktorza, Dragana Despotović, Dan S Tawfik, Yaakov Levy

J Am Chem Soc· November 2022

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How gene duplication diversifies the landscape of protein oligomeric state and function.
Saurav Mallik, Dan S Tawfik, Emmanuel D Levy

Curr Opin Genet Dev· October 2022

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Characterization of ancestral Fe/Mn superoxide dismutases indicates their cambialistic origin.
Rosario Valenti, Jagoda Jabłońska, Dan S Tawfik

Protein Sci· October 2022

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Uniform binding and negative catalysis at the origin of enzymes.
Elad Noor, Avi I Flamholz, Vijay Jayaraman, Brian L Ross, Yair Cohen, Dan S Tawfik

Protein Sci· August 2022

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Peptide-RNA Coacervates as a Cradle for the Evolution of Folded Domains.
Manas Seal, Orit Weil-Ktorza, Dragana Despotović, Dan S Tawfik, Yaakov Levy

J Am Chem Soc· August 2022

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Utilization of diverse organophosphorus pollutants by marine bacteria.
Dragana Despotović, Einav Aharon, Olena Trofimyuk, Artem Dubovetskyi, Kesava Phaneendra Cherukuri, Dan S Tawfik

Proc Natl Acad Sci U S A· August 2022

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Innovation and tinkering in the evolution of oxidases.
Jagoda Jabłońska, Dan S Tawfik

Protein Sci· May 2022

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The evolutionary history of the HUP domain.
Ita Gruic-Sovulj, Liam M Longo, Jagoda Jabłońska, Dan S Tawfik

Crit Rev Biochem Mol Biol· February 2022

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A counter-enzyme complex regulates glutamate metabolism in Bacillus subtilis.
Vijay Jayaraman, D John Lee, Nadav Elad, Shay Vimer, Michal Sharon, Dan S Tawfik

Nat Chem Biol· February 2022

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Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance.
Kaitlyn Tsai, Vanja Stojković, Lianet Noda-Garcia, Iris D Young, Alexander G Myasnikov, Dan S Tawfik

Elife· January 2022

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Dimethyl sulfide mediates microbial predator-prey interactions between zooplankton and algae in the ocean.
Adva Shemi, Uria Alcolombri, Daniella Schatz, Viviana Farstey, Flora Vincent, Dan S Tawfik

Nat Microbiol· November 2021

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Preface.
Dan S Tawfik

Methods Enzymol· June 2021

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Preface.
Dan S Tawfik

Methods Enzymol· June 2021

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Erratum to: Bridging themes: short protein segments found in different architectures.
Rachel Kolodny, Sergey Nepomnyachiy, Dan S Tawfik, Nir Ben-Tal

Mol Biol Evol· June 2021

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Bridging Themes: Short Protein Segments Found in Different Architectures.
Rachel Kolodny, Sergey Nepomnyachiy, Dan S Tawfik, Nir Ben-Tal

Mol Biol Evol· May 2021

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On the evolution of chaperones and cochaperones and the expansion of proteomes across the Tree of Life.
Mathieu E Rebeaud, Saurav Mallik, Pierre Goloubinoff, Dan S Tawfik

Proc Natl Acad Sci U S A· May 2021

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The evolution of oxygen-utilizing enzymes suggests early biosphere oxygenation.
Jagoda Jabłońska, Dan S Tawfik

Nat Ecol Evol· April 2021

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Helicase-like functions in phosphate loop containing beta-alpha polypeptides.
Pratik Vyas, Olena Trofimyuk, Liam M Longo, Fanindra Kumar Deshmukh, Michal Sharon, Dan S Tawfik

Proc Natl Acad Sci U S A· April 2021

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Quinone Methide-Based Organophosphate Hydrolases Inhibitors: Trans Proximity Labelers versus Cis Labeling Activity-Based Probes.
Artem Dubovetskyi, Kesava Phaneendra Cherukuri, Yacov Ashani, Anna Meshcheriakova, Eitan Reuveny, Dan S Tawfik

Chembiochem· March 2021

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On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment.
Liam M Longo, Jagoda Jabłońska, Pratik Vyas, Manil Kanade, Rachel Kolodny, Dan S Tawfik

Elife· December 2020

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Polyamines Mediate Folding of Primordial Hyperacidic Helical Proteins.
Dragana Despotović, Liam M Longo, Einav Aharon, Amit Kahana, Tali Scherf, Dan S Tawfik

Biochemistry· November 2020

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Determining the interaction status and evolutionary fate of duplicated homomeric proteins.
Saurav Mallik, Dan S Tawfik

PLoS Comput Biol· August 2020

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