Publications by authors named "David C Trudgian"

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ProteoSign: an end-user online differential proteomics statistical analysis platform.
Georgios Efstathiou, Andreas N Antonakis, Georgios A Pavlopoulos, Theodosios Theodosiou, Peter Divanach, David C Trudgian

Nucleic Acids Res· July 2017

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Fucosylation and protein glycosylation create functional receptors for cholera toxin.
Amberlyn M Wands, Akiko Fujita, Janet E McCombs, Jakob Cervin, Benjamin Dedic, David C Trudgian

Elife· October 2015

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Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria.
Dor Salomon, John A Klimko, David C Trudgian, Lisa N Kinch, Nick V Grishin

PLoS Pathog· August 2015

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Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3ζ and ZAP-70 tyrosine phosphorylation.
Mogjiborahman Salek, Simon McGowan, David C Trudgian, Omer Dushek, Ben de Wet

PLoS One· August 2014

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Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics.
Xiaofeng Guo, David C Trudgian, Andrew Lemoff, Sivaramakrishna Yadavalli, Hamid Mirzaei

Mol Cell Proteomics· June 2014

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GOAT--a simple LC-MS/MS gradient optimization tool.
David C Trudgian, Roman Fischer, Xiaofeng Guo, Benedikt M Kessler, Hamid Mirzaei

Proteomics· June 2014

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Marker for type VI secretion system effectors.
Dor Salomon, Lisa N Kinch, David C Trudgian, Xiaofeng Guo, John A Klimko

Proc Natl Acad Sci U S A· June 2014

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Optimal translational termination requires C4 lysyl hydroxylation of eRF1.
Tianshu Feng, Atsushi Yamamoto, Sarah E Wilkins, Elizaveta Sokolova, Luke A Yates, David C Trudgian

Mol Cell· February 2014

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Regulation of OSR1 and the sodium, potassium, two chloride cotransporter by convergent signals.
Samarpita Sengupta, Andrés Lorente-Rodríguez, Svetlana Earnest, Steve Stippec, Xiaofeng Guo, David C Trudgian

Proc Natl Acad Sci U S A· November 2013

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Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation.
Sunil Laxman, Benjamin M Sutter, Xi Wu, Sujai Kumar, Xiaofeng Guo, David C Trudgian

Cell· July 2013

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Mapping the phosphoproteome of influenza A and B viruses by mass spectrometry.
Edward C Hutchinson, Eleanor M Denham, Benjamin Thomas, David C Trudgian, Svenja S Hester

PLoS Pathog· April 2013

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QuaNCAT: quantitating proteome dynamics in primary cells.
Andrew J M Howden, Vincent Geoghegan, Kristin Katsch, Georgios Efstathiou, Bhaskar Bhushan, David C Trudgian

Nat Methods· April 2013

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Cloud CPFP: a shotgun proteomics data analysis pipeline using cloud and high performance computing.
David C Trudgian, Hamid Mirzaei

J Proteome Res· December 2012

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Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans.
Wei Ge, Alexander Wolf, Tianshu Feng, Chia-Hua Ho, Rok Sekirnik, David C Trudgian

Nat Chem Biol· December 2012

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A method for large-scale identification of protein arginine methylation.
Thomas Uhlmann, Vincent L Geoghegan, Benjamin Thomas, Gabriela Ridlova, David C Trudgian

Mol Cell Proteomics· November 2012

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The FIH hydroxylase is a cellular peroxide sensor that modulates HIF transcriptional activity.
Norma Masson, Rachelle S Singleton, Rok Sekirnik, David C Trudgian, Lucy J Ambrose

EMBO Rep· March 2012

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Discovery of candidate serum proteomic and metabolomic biomarkers in ankylosing spondylitis.
Roman Fischer, David C Trudgian, Cynthia Wright, Gethin Thomas, Linda A Bradbury

Mol Cell Proteomics· February 2012

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Quantitative mass spectrometry reveals dynamics of factor-inhibiting hypoxia-inducible factor-catalyzed hydroxylation.
Rachelle S Singleton, David C Trudgian, Roman Fischer, Benedikt M Kessler, Peter J Ratcliffe

J Biol Chem· September 2011

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Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline.
David C Trudgian, Gabriela Ridlova, Roman Fischer, Mukram M Mackeen, Nicola Ternette

Proteomics· July 2011

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Protein kinase C and NF-κB-dependent CD4 downregulation in macrophages induced by T cell-derived soluble factors: consequences for HIV-1 infection.
Rui André Saraiva Raposo, David C Trudgian, Benjamin Thomas, Bonnie van Wilgenburg, Sally A Cowley

J Immunol· July 2011

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T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component.
Claudia Brockmeyer, Wolfgang Paster, David Pepper, Choon P Tan, David C Trudgian

J Biol Chem· March 2011

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CPFP: a central proteomics facilities pipeline.
David C Trudgian, Benjamin Thomas, Simon J McGowan, Benedikt M Kessler, Mogjiborahman Salek

Bioinformatics· April 2010

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