Publications by authors named "Do Kim-Anh"

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SMAGS-LASSO: A Novel Feature Selection Method for Sensitivity Maximization in Early Cancer Detection.
Hamid Khoshfekr Rudsari, Sara Khorami-Sarvestani, Johannes F Fahrmann, James P Long, Samir Hanash, Kim-Anh Do

Cancer Epidemiol Biomarkers Prev· December 2025

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Digital twins in healthcare: a comprehensive review and future directions.
Hamid Khoshfekr Rudsari, Becky Tseng, Hongxu Zhu, Lulu Song, Chunhui Gu, Kim-Anh Do

Front Digit Health· December 2025

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Long-chain sulfatide enrichment is an actionable metabolic vulnerability in intraductal papillary mucinous neoplasm (IPMN)-associated pancreatic cancers.
Yihui Chen, Riccardo Ballarò, Marta Sans, Fredrik Ivar Thege, Mingxin Zuo, Kim-Anh Do

Gut· September 2025

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Cyst fluid proteins stratify malignant risk of intraductal papillary mucinous neoplasm of the pancreas.
Chunliang Liu, Amber Mosley, Ehsan Irajizad, Michele Yip-Schneider, Huangbing Wu, Kim-Anh Do

Cancer Lett· August 2025

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ADAMs contribute to triple negative breast cancer via mTORC1 pathway: targeting ADAM-mTOR axis improves efficacy.
Shuying Liu, Huiqin Chen, Mihai Gagea, Lorenzo Federico, Fan Zhang, Kim-Anh Do

Cancer Lett· August 2025

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AUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes.
Hongxu Zhu, Amir Asiaee, Leila Azinfar, Jun Li, Han Liang, Kim-Anh Do

Brief Bioinform· August 2025

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CAT: a conditional association test for microbiome data using a permutation approach.
Yushu Shi, Liangliang Zhang, Kim-Anh Do, Robert R Jenq, Christine B Peterson

Brief Bioinform· July 2025

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Oral microbial signatures of head and neck cancer patients with diverse longitudinal oral mucositis severity patterns.
Saritha Kodikara, Jiadong Mao, Erin Marie D San Valentin, Kim-Anh Do, Cielito C Reyes-Gibby, Kim-Anh Lê Cao

bioRxiv· July 2025

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Integrated Metabolomics and Spatial Transcriptomics of Cystic Pancreatic Cancer Precursors Reveals Dysregulated Polyamine Metabolism as a Biomarker of Progression.
Ricardo A León-Letelier, Yihui Chen, Rongzhang Dou, Ehsan Irajizad, Michele T Yip-Schneider, Kim-Anh Do

Clin Cancer Res· June 2025

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Elevated levels of circulating microbial-associated uremic toxins are associated with metastatic duodenopancreatic neuroendocrine tumors in patients with Multiple Endocrine Neoplasia Type 1.
Riccardo Ballarò, Amanda R Wasylishen, Carolina R C Pieterman, Courtney Olsen, Ehsan Irajizad, Kim-Anh Do

Cancer Lett· April 2025

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Grape-Pi: graph-based neural networks for enhanced protein identification in proteomics pipelines.
Chunhui Gu, Seyyed Mahmood Ghasemi, Yining Cai, Johannes F Fahrmann, James P Long, Kim-Anh Do

Bioinform Adv· April 2025

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A Novel Sensitivity Maximization at a Given Specificity Method for Binary Classifications.
Seyyed Mahmood Ghasemi, Chunhui Gu, Johannes F Fahrmann, Samir Hanash, Kim-Anh Do

Cancer Prev Res (Phila)· March 2025

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Lead time trajectory of blood-based protein biomarkers for detection of pancreatic cancer based on repeat testing.
Johannes F Fahrmann, Michele Yip-Schneider, Jody Vykoukal, Rachelle Spencer, Jennifer B Dennison, Kim-Anh Do

Cancer Lett· March 2025

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AUC-PR is a More Informative Metric for Assessing the Biological Relevance of In Silico Cellular Perturbation Prediction Models.
Hongxu Zhu, Amir Asiaee, Leila Azinfar, Jun Li, Han Liang, Kim-Anh Do

bioRxiv· March 2025

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Causal models and prediction in cell line perturbation experiments.
James P Long, Yumeng Yang, Shohei Shimizu, Thong Pham, Kim-Anh Do

BMC Bioinformatics· January 2025

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Correction: Diet Modification and Metformin Have a Beneficial Effect in a Fly Model of Obesity and Mucormycosis.
Fazal Shirazi, Dimitrios Farmakiotis, Yuanqing Yan, Nathaniel Albert, Do Kim-Anh

PLoS One· January 2025

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Biomarker trajectory for earlier detection of lung cancer.
Ehsan Irajizad, Johannes F Fahrmann, Iakovos Toumazis, Jody Vykoukal, Jennifer B Dennison, Kim-Anh Do

EBioMedicine· October 2024

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MicroRNAs are enriched at COVID-19 genomic risk regions, and their blood levels correlate with the COVID-19 prognosis of cancer patients infected by SARS-CoV-2.
Simone Anfossi, Faezeh Darbaniyan, Joseph Quinlan, Steliana Calin, Masayoshi Shimizu, Kim-Anh Do

Mol Cancer· October 2024

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A metabolite-based liquid biopsy for detection of ovarian cancer.
Johannes F Fahrmann, Seyyed Mahmood Ghasemi, Chae Y Han, Ranran Wu, Jennifer B Dennison, Kim-Anh Do

Biomark Res· August 2024

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survivalContour: visualizing predicted survival via colored contour plots.
Yushu Shi, Liangliang Zhang, Kim-Anh Do, Robert R Jenq, Christine B Peterson

Bioinform Adv· July 2024

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Validation of a Blood-Based Protein Biomarker Panel for a Risk Assessment of Lethal Lung Cancer in the Physicians' Health Study.
Lulu Song, Ehsan Irajizad, Andrew Rundle, Howard D Sesso, John Michael Gaziano, Kim-Anh Do

Cancers (Basel)· May 2024

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A novel method to guide biomarker combinations to optimize the sensitivity.
Seyyed Mahmood Ghasem, Johannes F Fahrmann, Samir Hanash, Kim-Anh Do, James P Long

bioRxiv· April 2024

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Analysis of Microbiome Data.
Christine B Peterson, Satabdi Saha, Kim-Anh Do

Annu Rev Stat Appl· April 2024

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Clonal dominance defines metastatic dissemination in pancreatic cancer.
I-Lin Ho, Chieh-Yuan Li, Fuchenchu Wang, Li Zhao, Jingjing Liu, Kim-Anh Do

Sci Adv· March 2024

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Healthcare provider perceptions and reported practices regarding opioid prescription for patients with chronic cancer pain.
Joseph Arthur, Tonya Edwards, Zhanni Lu, Magdelene Doris Amoateng, Kwame Koom-Dadzie, Kim-Anh Do

Support Care Cancer· January 2024

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