Publications by authors named "Emiley Eloe-Fadrosh"

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A genomic view of Earth's biomes.
Gitta Szabó, Emiley A Eloe-Fadrosh, Jennifer Pett-Ridge, Tanja Woyke

Nat Rev Genet· January 2026

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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies.
Julia M Kelliher, Chloe Mirzayi, Sarah R Bordenstein, Aaron Oliver, Christina A Kellogg, Emiley A Eloe-Fadrosh

Nat Microbiol· December 2025

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Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient.
Gareth Trubl, Simon Roux, Mikayla A Borton, Arvind Varsani, Yueh-Fen Li, Emiley A Eloe-Fadrosh

Nat Commun· December 2025

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Red seaweed supplementation suppresses methanogenesis in the rumen, revealing potentially advantageous traits among hydrogenotrophic bacteria.
Pengfan Zhang, Breanna Roque, Pedro Romero, Nicole Shapiro, Emiley Eloe-Fadrosh

Microbiome· November 2025

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Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes.
Mateus B Fiamenghi, Antonio Pedro Camargo, Iro N Chasapi, Fotis A Baltoumas, Simon Roux, Emiley A Eloe-Fadrosh

Nucleic Acids Res· November 2025

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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs.
Marike Palmer, Nancy O Nou, Lara A Turello, Carolyn E Power, John C Ong, Emiley A Eloe-Fadrosh

Syst Appl Microbiol· September 2025

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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
Matthew Kellom, Maureen Berg, I-Min A Chen, Ken Chu, Alicia Clum, Emiley A Eloe-Fadrosh

mSystems· August 2025

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Northern peatland microbial communities exhibit resistance to warming and acquire electron acceptors from soil organic matter.
Katherine Duchesneau, Borja Aldeguer-Riquelme, Caitlin Petro, Ghiwa Makke, Madison Green, Emiley Eloe-Fadrosh

Nat Commun· July 2025

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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Clara A Fuchsman, Jacob A Cram, Marcel Huntemann, Robert Riley, Brian Foster, Emiley A Eloe-Fadrosh

Microbiol Resour Announc· April 2025

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A blueprint for contemporary studies of microbiomes.
Laure B Bindels, Joy E M Watts, Kevin R Theis, Víctor J Carrion, Adam Ossowicki, Emiley A Eloe-Fadrosh

Microbiome· April 2025

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Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024.
Julia M Kelliher, Mashael Aljumaah, Sarah R Bordenstein, J Rodney Brister, Patrick S G Chain, Emiley A Eloe-Fadrosh

Environ Microbiome· April 2025

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A cost and community perspective on the barriers to microbiome data reuse.
Julia M Kelliher, Leah Y D Johnson, Francisca E Rodriguez, Jaclyn K Saunders, Marie E Kroeger, Emiley A Eloe-Fadrosh

Front Bioinform· April 2025

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Climate-driven succession in marine microbiome biodiversity and biogeochemical function.
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Emiley A Eloe-Fadrosh

Nat Commun· April 2025

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Author Correction: Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
Nancy O Nou, Jonathan K Covington, Dengxun Lai, Xavier Mayali, Cale O Seymour, Emiley Eloe-Fadrosh

Nat Commun· April 2025

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Quantifying the impact of workshops promoting microbiome data standards and data stewardship.
Julia M Kelliher, Francisca E Rodriguez, Leah Y D Johnson, Simon Roux, Montana Smith, Emiley A Eloe-Fadrosh

Sci Rep· March 2025

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A standards perspective on genomic data reusability and reproducibility.
Ishi Keenum, Scott A Jackson, Emiley Eloe-Fadrosh, Lynn M Schriml

Front Bioinform· March 2025

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A functional microbiome catalogue crowdsourced from North American rivers.
Mikayla A Borton, Bridget B McGivern, Kathryn R Willi, Ben J Woodcroft, Annika C Mosier, Emiley A Eloe-Fadrosh

Nature· January 2025

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Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

Sci Data· January 2025

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Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource.
Julia M Kelliher, Yan Xu, Mark C Flynn, Michal Babinski, Shane Canon, Emiley A Eloe-Fadrosh

Comput Struct Biotechnol J· December 2024

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Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
Nancy O Nou, Jonathan K Covington, Dengxun Lai, Xavier Mayali, Cale O Seymour, Emiley Eloe-Fadrosh

Nat Commun· November 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

Sci Data· November 2024

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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Emiley A Eloe-Fadrosh

Sci Data· September 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

bioRxiv· September 2024

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From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.
Winston E Anthony, Steven D Allison, Caitlin M Broderick, Luciana Chavez Rodriguez, Alicia Clum, Emiley Eloe-Fadrosh

Environ Microbiome· August 2024

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Climate-driven succession in marine microbiome biodiversity and biogeochemical function.
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Emiley A Eloe-Fadrosh

Res Sq· August 2024

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