Publications by authors named "Jacob Parnell"

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Combining science and policy for a unified global soil biodiversity observatory.
J Jacob Parnell, Peter de Ruiter, Carlos Guerra, Luca Montanarella, Natalia Rodriguez Eugenio

Nat Ecol Evol· August 2025

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Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization.
J Jacob Parnell, Simina Vintila, Clara Tang, Maggie R Wagner, Manuel Kleiner

Microbiol Spectr· January 2024

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Prevalence, Risk Factors, and Sequelae of Asymptomatic Clostridioides difficile Colonization in Children with Cystic Fibrosis.
Seth A Reasoner, Irtiqa F Fazili, Rachel Bernard, Jacob M Parnell, Andrew G Sokolow

J Cyst Fibros· September 2023

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Pediatric Fecal Microbiota Transplantation in Recurrent .
Jacob M Parnell, Maribeth R Nicholson, Richard Kellermayer, Stacy A Kahn

Pediatr Ann· December 2021

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Two-step Testing for Clostridioides Difficile is Inadequate in Differentiating Infection From Colonization in Children.
Jacob M Parnell, Irtiqa Fazili, Sarah C Bloch, D Borden Lacy, Valeria A Garcia-Lopez

J Pediatr Gastroenterol Nutr· March 2021

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Esophageal Mucosal Impedance Patterns Discriminate Patients With Eosinophilic Esophagitis From Patients With GERD.
Yash Choksi, Pooja Lal, James C Slaughter, Rohit Sharda, Jacob Parnell

Clin Gastroenterol Hepatol· May 2018

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From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms.
J Jacob Parnell, Randy Berka, Hugh A Young, Joseph M Sturino, Yaowei Kang

Front Plant Sci· August 2016

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Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.
Philippe Rocca-Serra, Ramona Walls, Jacob Parnell, Rachel Gallery, Jie Zheng

Database (Oxford)· September 2015

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Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock.
J Jacob Parnell, Stephen J Callister, Giovanni Rompato, Carrie D Nicora, Ljiljana Paša-Tolić

Sci Rep· August 2013

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Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400.
Marianna A Patrauchan, J Jacob Parnell, Michael P McLeod, Christine Florizone, James M Tiedje

Arch Microbiol· September 2011

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Functional biogeography as evidence of gene transfer in hypersaline microbial communities.
J Jacob Parnell, Giovanni Rompato, Leigh C Latta, Michael E Pfrender, Joy D Van Nostrand

PLoS One· September 2010

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Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400.
J Jacob Parnell, Vincent J Denef, Joonhong Park, Tamara Tsoi, James M Tiedje

Biodegradation· February 2010

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Biodiversity in microbial communities: system scale patterns and mechanisms.
J Jacob Parnell, Todd A Crowl, Bart C Weimer, Michael E Pfrender

Mol Ecol· April 2009

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Relating perturbation magnitude to temporal gene expression in biological systems.
Stephen J Callister, J Jacob Parnell, Michael E Pfrender, Syed A Hashsham

BMC Res Notes· March 2009

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Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress.
J Jacob Parnell, Joonhong Park, Vincent Denef, Tamara Tsoi, Syed Hashsham

Appl Environ Microbiol· October 2006

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Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.
Patrick S G Chain, Vincent J Denef, Konstantinos T Konstantinidis, Lisa M Vergez, Loreine Agulló, J Jacob Parnell

Proc Natl Acad Sci U S A· October 2006

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