Publications by authors named "John Pinney"

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Intrahost speciations and host switches played an important role in the evolution of herpesviruses.
Anderson F Brito, Guy Baele, Kanika D Nahata, Nathan D Grubaugh, John W Pinney

Virus Evol· January 2021

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The evolution of protein domain repertoires: Shedding light on the origins of the family.
Anderson F Brito, John W Pinney

Virus Evol· January 2020

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Protein-Protein Interactions in Virus-Host Systems.
Anderson F Brito, John W Pinney

Front Microbiol· August 2017

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PathwayBooster: a tool to support the curation of metabolic pathways.
Rodrigo Liberal, Beata K Lisowska, David J Leak, John W Pinney

BMC Bioinformatics· March 2015

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Derivative processes for modelling metabolic fluxes.
Justina Zurauskienė, Paul Kirk, Thomas Thorne, John Pinney, Michael Stumpf

Bioinformatics· July 2014

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Modular biological function is most effectively captured by combining molecular interaction data types.
Ryan M Ames, Jamie I Macpherson, John W Pinney, Simon C Lovell, David L Robertson

PLoS One· November 2013

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Analysis of metabolic evolution in bacteria using whole-genome metabolic models.
William A Bryant, Ali A Faruqi, John W Pinney

J Comput Biol· October 2013

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Simple topological properties predict functional misannotations in a metabolic network.
Rodrigo Liberal, John W Pinney

Bioinformatics· July 2013

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Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules.
Kerstin J Williams, William A Bryant, Victoria A Jenkins, Geraint R Barton, Adam A Witney, John W Pinney

BMC Genomics· July 2013

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AMBIENT: Active Modules for Bipartite Networks--using high-throughput transcriptomic data to dissect metabolic response.
William A Bryant, Michael J E Sternberg, John W Pinney

BMC Syst Biol· March 2013

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Evolutionary characteristics of bacterial two-component systems.
Xia Sheng, Maxime Huvet, John W Pinney, Michael P H Stumpf

Adv Exp Med Biol· October 2012

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Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems.
Jamie I MacPherson, Jonathan E Dickerson, John W Pinney, David L Robertson

PLoS Comput Biol· July 2010

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The biological context of HIV-1 host interactions reveals subtle insights into a system hijack.
Jonathan E Dickerson, John W Pinney, David L Robertson

BMC Syst Biol· June 2010

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Low-complexity regions within protein sequences have position-dependent roles.
Alain Coletta, John W Pinney, David Y Weiss Solís, James Marsh, Steve R Pettifer

BMC Syst Biol· April 2010

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Making the right connections: biological networks in the light of evolution.
Christopher G Knight, John W Pinney

Bioessays· October 2009

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From evidence to inference: probing the evolution of protein interaction networks.
Oliver Ratmann, Carsten Wiuf, John W Pinney

HFSP J· October 2009

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Evolving proteins at Darwin's bicentenary.
John W Pinney, Michael P H Stumpf

Genome Biol· September 2009

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Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6.
Jonathan D Humphries, Adam Byron, Mark D Bass, Sue E Craig, John W Pinney

Sci Signal· September 2009

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A unique dual activity amino acid hydroxylase in Toxoplasma gondii.
Elizabeth A Gaskell, Judith E Smith, John W Pinney, Dave R Westhead, Glenn A McConkey

PLoS One· July 2009

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Back to basics--how the evolution of the extracellular matrix underpinned vertebrate evolution.
Julie Huxley-Jones, John W Pinney, John Archer, David L Robertson, Raymond P Boot-Handford

Int J Exp Pathol· April 2009

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HIV-host interactions: a map of viral perturbation of the host system.
John W Pinney, Jonathan E Dickerson, William Fu, Brigitte E Sanders-Beer, Roger G Ptak

AIDS· March 2009

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JNets: exploring networks by integrating annotation.
Jamie I Macpherson, John W Pinney, David L Robertson

BMC Bioinformatics· March 2009

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Rapid absorption of nicotine from new nicotine gum formulations.
Saul Shiffman, Edward J Cone, August R Buchhalter, Jack E Henningfield, Jeffrey M Rohay, John M Pinney

Pharmacol Biochem Behav· January 2009

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Cataloguing the HIV type 1 human protein interaction network.
Roger G Ptak, William Fu, Brigitte E Sanders-Beer, Jonathan E Dickerson, John W Pinney

AIDS Res Hum Retroviruses· December 2008

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Identifying the important HIV-1 recombination breakpoints.
John Archer, John W Pinney, Jun Fan, Etienne Simon-Loriere, Eric J Arts

PLoS Comput Biol· September 2008

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