Publications by authors named "Maria A Doyle"

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Learning and teaching biological data science in the Bioconductor community.
Jenny Drnevich, Frederick J Tan, Fabricio Almeida-Silva, Robert Castelo, Aedin C Culhane, Maria A Doyle

PLoS Comput Biol· April 2025

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Learning and teaching biological data science in the Bioconductor community.
Jenny Drnevich, Frederick J Tan, Fabricio Almeida-Silva, Robert Castelo, Aedin C Culhane, Maria A Doyle

ArXiv· March 2025

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Correction: An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond.
Jason J Williams, Rochelle E Tractenberg, Bérénice Batut, Erin A Becker, Anne M Brown, Maria A Doyle

PLoS One· February 2025

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An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond.
Jason J Williams, Rochelle E Tractenberg, Bérénice Batut, Erin A Becker, Anne M Brown, Maria A Doyle

PLoS One· November 2023

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Galaxy Training: A powerful framework for teaching!
Saskia Hiltemann, Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Maria A Doyle

PLoS Comput Biol· January 2023

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Interfacing Seurat with the R tidy universe.
Stefano Mangiola, Maria A Doyle, Anthony T Papenfuss

Bioinformatics· November 2021

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RNA-Seq Data Analysis in Galaxy.
Bérénice Batut, Marius van den Beek, Maria A Doyle, Nicola Soranzo

Methods Mol Biol· June 2021

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User-friendly, scalable tools and workflows for single-cell RNA-seq analysis.
Pablo Moreno, Ni Huang, Jonathan R Manning, Suhaib Mohammed, Andrey Solovyev, Maria A Doyle

Nat Methods· April 2021

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tidybulk: an R tidy framework for modular transcriptomic data analysis.
Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A Doyle, Anthony T Papenfuss

Genome Biol· January 2021

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A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.
Mehmet Tekman, Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, Dave Clements, Maria A Doyle

Gigascience· October 2020

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Molecular comparison of pure ovarian fibroma with serous benign ovarian tumours.
Sally M Hunter, Genevieve V Dall, Maria A Doyle, Richard Lupat, Jason Li

BMC Res Notes· July 2020

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Germline whole exome sequencing of a family with appendiceal mucinous tumours presenting with pseudomyxoma peritonei.
Mei Sim Lung, Catherine A Mitchell, Maria A Doyle, Andrew C Lynch, Kylie L Gorringe

BMC Cancer· May 2020

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CDK13 cooperates with CDK12 to control global RNA polymerase II processivity.
Zheng Fan, Jennifer R Devlin, Simon J Hogg, Maria A Doyle, Paul F Harrison

Sci Adv· May 2020

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The RNA workbench 2.0: next generation RNA data analysis.
Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A Doyle

Nucleic Acids Res· July 2019

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PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories.
Kenneth D Doig, Andrew Fellowes, Anthony H Bell, Andrei Seleznev, David Ma, Maria A Doyle

Genome Med· April 2017

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Genomic characterisation of Eμ-Myc mouse lymphomas identifies Bcor as a Myc co-operative tumour-suppressor gene.
Marcus Lefebure, Richard W Tothill, Elizabeth Kruse, Edwin D Hawkins, Jake Shortt, Maria A Doyle

Nat Commun· March 2017

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Erratum to: Mutational landscape of mucinous ovarian carcinoma and its neoplastic precursors.
Georgina L Ryland, Sally M Hunter, Maria A Doyle, Franco Caramia, Jason Li

Genome Med· January 2017

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Id2 and E Proteins Orchestrate the Initiation and Maintenance of MLL-Rearranged Acute Myeloid Leukemia.
Margherita Ghisi, Lev Kats, Frederick Masson, Jason Li, Tobias Kratina, Maria A Doyle

Cancer Cell· July 2016

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Corrigendum: Whole-genome characterization of chemoresistant ovarian cancer.
Ann-Marie Patch, Elizabeth L Christie, Dariush Etemadmoghadam, Dale W Garsed, Joshy George, Maria A Doyle

Nature· November 2015

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Molecular profiling of low grade serous ovarian tumours identifies novel candidate driver genes.
Sally M Hunter, Michael S Anglesio, Georgina L Ryland, Raghwa Sharma, Yoke-Eng Chiew, Maria A Doyle

Oncotarget· November 2015

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Loss of heterozygosity: what is it good for?
Georgina L Ryland, Maria A Doyle, David Goode, Samantha E Boyle, David Y H Choong

BMC Med Genomics· August 2015

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Mutational landscape of mucinous ovarian carcinoma and its neoplastic precursors.
Georgina L Ryland, Sally M Hunter, Maria A Doyle, Franco Caramia, Jason Li

Genome Med· August 2015

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Prevalence of PALB2 mutations in Australian familial breast cancer cases and controls.
Ella R Thompson, Kylie L Gorringe, Simone M Rowley, Michelle W Wong-Brown, Simone McInerny, Maria A Doyle

Breast Cancer Res· August 2015

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Whole-genome characterization of chemoresistant ovarian cancer.
Ann-Marie Patch, Elizabeth L Christie, Dariush Etemadmoghadam, Dale W Garsed, Joshy George, Maria A Doyle

Nature· May 2015

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Studying cancer genomics through next-generation DNA sequencing and bioinformatics.
Maria A Doyle, Jason Li, Ken Doig, Andrew Fellowes, Stephen Q Wong

Methods Mol Biol· January 2015

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