Publications by authors named "Maude David"

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Learning a deep language model for microbiomes: The power of large scale unlabeled microbiome data.
Quintin Pope, Rohan Varma, Christine Tataru, Maude M David, Xiaoli Fern

PLoS Comput Biol· May 2025

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Sex shapes gut-microbiota-brain communication and disease.
Kenton C Hokanson, Caroline Hernández, Grace E Deitzler, Jenna E Gaston, Maude M David

Trends Microbiol· February 2024

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Cytokine induced inflammatory bowel disease model using organ-on-a-chip technology.
Christine Tataru, Maya Livni, Carrie Marean-Reardon, Maria Clara Franco, Maude David

PLoS One· December 2023

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Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.
James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Maude David

Nat Neurosci· July 2023

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Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism.
Christine Tataru, Marie Peras, Erica Rutherford, Kaiti Dunlap, Xiaochen Yin, Maude M David

Sci Rep· July 2023

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Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.
Kiana A West, Xiaochen Yin, Erica M Rutherford, Brendan Wee, Jinlyung Choi, Maude M David

Sci Rep· October 2022

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An open-source, low-cost voluntary running activity tracking tool for in vivo rodent studies.
Grace E Deitzler, Nicholas P Bira, Joseph R Davidson, Maude M David

PLoS One· September 2022

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GMEmbeddings: An R Package to Apply Embedding Techniques to Microbiome Data.
Christine Tataru, Austin Eaton, Maude M David

Front Bioinform· April 2022

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Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning.
Maude M David, Christine Tataru, Quintin Pope, Lydia J Baker, Mary K English

mSystems· February 2022

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Longitudinal study of stool-associated microbial taxa in sibling pairs with and without autism spectrum disorder.
Christine Tataru, Austin Martin, Kaitlyn Dunlap, Marie Peras, Brianna S Chrisman, Maude M David

ISME Commun· December 2021

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Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers.
Brianna S Chrisman, Kelley M Paskov, Nate Stockham, Jae-Yoon Jung, Maya Varma, Maude David

BMC Bioinformatics· October 2021

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Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes.
Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating

mSystems· April 2021

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The Role of the Microbiome in Autism: All That We Know about All That We Don't Know.
Maude M David

mSystems· April 2021

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Correction: Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease.
Christine A Tataru, Maude M David

PLoS Comput Biol· November 2020

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Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease.
Christine A Tataru, Maude M David

PLoS Comput Biol· May 2020

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Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.
Jeffrey A Kimbrel, Nicholas Ballor, Yu-Wei Wu, Maude M David, Terry C Hazen

Front Microbiol· July 2018

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Translational Meta-analytical Methods to Localize the Regulatory Patterns of Neurological Disorders in the Human Brain.
Vanessa Sochat, Maude David, Dennis P Wall

AMIA Annu Symp Proc· April 2018

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Comorbid Analysis of Genes Associated with Autism Spectrum Disorders Reveals Differential Evolutionary Constraints.
Maude M David, David Enard, Alp Ozturk, Jena Daniels, Jae-Yoon Jung

PLoS One· July 2017

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Cross-disorder comparative analysis of comorbid conditions reveals novel autism candidate genes.
Leticia Diaz-Beltran, Francisco J Esteban, Maya Varma, Alp Ortuzk, Maude David

BMC Genomics· April 2017

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Microbial ecology of chlorinated solvent biodegradation.
Maude M David, Sebastien Cecillon, Brett M Warne, Emmanuel Prestat, Janet K Jansson

Environ Microbiol· December 2015

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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes.
Jenni Hultman, Mark P Waldrop, Rachel Mackelprang, Maude M David, Jack McFarland, A David McGuire

Nature· May 2015

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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.
Emmanuel Prestat, Maude M David, Jenni Hultman, Neslihan Taş, Regina Lamendella, David D Myrold

Nucleic Acids Res· October 2014

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Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments.
Daniel Bravo, Gaëtan Martin, Maude M David, Guillaume Cailleau, Eric Verrecchia

FEMS Microbiol Lett· November 2013

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Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.
Carrie D Nicora, Brian J Anderson, Stephen J Callister, Angela D Norbeck, Sam O Purvine, Maude M David

Proteomics· October 2013

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Modeling of phenoxy acid herbicide mineralization and growth of microbial degraders in 15 soils monitored by quantitative real-time PCR of the functional tfdA gene.
Jacob Bælum, Emmanuel Prestat, Maude M David, Bjarne W Strobel, Carsten S Jacobsen

Appl Environ Microbiol· August 2012

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