Publications by authors named "Nicholas Putnam"

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Enhancing CAR T-cell therapy manufacturing efficiency through semi-automated bioprocessing.
Jason Isaacson, Prajakta Bhanap, Nicholas Putnam, Jasmine Padilla, Nujhat Fatima

Clin Transl Immunology· June 2025

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Accelerating CAR T cell manufacturing with an automated next-day process.
Moloud Ahmadi, Nicholas Putnam, Max Dotson, Danny Hayoun, Jasmine Padilla

Curr Res Transl Med· April 2025

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Towards complete and error-free genome assemblies of all vertebrate species.
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Nicholas H Putnam

Nature· April 2021

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Genome biology of the paleotetraploid perennial biomass crop Miscanthus.
Therese Mitros, Adam M Session, Brandon T James, Guohong Albert Wu, Mohammad B Belaffif, Nicholas H Putnam

Nat Commun· October 2020

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Deeply conserved synteny resolves early events in vertebrate evolution.
Oleg Simakov, Ferdinand Marlétaz, Jia-Xing Yue, Brendan O'Connell, Jerry Jenkins, Nicholas H Putnam

Nat Ecol Evol· June 2020

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Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.
Christopher J Troll, Nicholas H Putnam, Paul D Hartley, Brandon Rice, Marco Blanchette

J Mol Diagn· May 2019

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Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis.
Kyle A Long, Carlos W Nossa, Mary A Sewell, Nicholas H Putnam, Joseph F Ryan

Gigascience· October 2017

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Genome evolution in the allotetraploid frog Xenopus laevis.
Adam M Session, Yoshinobu Uno, Taejoon Kwon, Jarrod A Chapman, Atsushi Toyoda, Nicholas Putnam

Nature· October 2016

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Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle.
Jia-Xing Yue, Iryna Kozmikova, Hiroki Ono, Carlos W Nossa, Zbynek Kozmik, Nicholas H Putnam

Genome Biol Evol· August 2016

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Nicholas H Putnam, Brendan L O'Connell, Jonathan C Stites, Brandon J Rice, Marco Blanchette

Genome Res· March 2016

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Evolution of the perlecan/HSPG2 gene and its activation in regenerating Nematostella vectensis.
Curtis R Warren, Elias Kassir, James Spurlin, Jerahme Martinez, Nicholas H Putnam

PLoS One· January 2016

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Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida.
Allison S Zwarycz, Carlos W Nossa, Nicholas H Putnam, Joseph F Ryan

Genome Biol Evol· December 2015

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Hemichordate genomes and deuterostome origins.
Oleg Simakov, Takeshi Kawashima, Ferdinand Marlétaz, Jerry Jenkins, Ryo Koyanagi, Nicholas H Putnam

Nature· November 2015

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Evolutionary profiling reveals the heterogeneous origins of classes of human disease genes: implications for modeling disease genetics in animals.
Evan K Maxwell, Christine E Schnitzler, Paul Havlak, Nicholas H Putnam, Anh-Dao Nguyen

BMC Evol Biol· October 2014

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The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution.
Jia-Xing Yue, Jr-Kai Yu, Nicholas H Putnam, Linda Z Holland

Genome Biol Evol· September 2014

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Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication.
Carlos W Nossa, Paul Havlak, Jia-Xing Yue, Jie Lv, Kimberly Y Vincent, Nicholas H Putnam

Gigascience· July 2014

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The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.
Joseph F Ryan, Kevin Pang, Christine E Schnitzler, Anh-Dao Nguyen, R Travis Moreland, Nicholas H Putnam

Science· December 2013

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Insights into bilaterian evolution from three spiralian genomes.
Oleg Simakov, Ferdinand Marletaz, Sung-Jin Cho, Eric Edsinger-Gonzales, Paul Havlak, Nicholas H Putnam

Nature· January 2013

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Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
Richard Sucgang, Alan Kuo, Xiangjun Tian, William Salerno, Anup Parikh, Nicholas H Putnam

Genome Biol· February 2012

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Phytozome: a comparative platform for green plant genomics.
David M Goodstein, Shengqiang Shu, Russell Howson, Rochak Neupane, Richard D Hayes, Nicholas Putnam

Nucleic Acids Res· January 2012

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Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes.
Jie Lv, Paul Havlak, Nicholas H Putnam

BMC Bioinformatics· October 2011

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The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Nicholas Putnam

J Biomed Semantics· August 2011

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The Amphimedon queenslandica genome and the evolution of animal complexity.
Mansi Srivastava, Oleg Simakov, Jarrod Chapman, Bryony Fahey, Marie E A Gauthier, Nicholas H Putnam

Nature· August 2010

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The genome of the Western clawed frog Xenopus tropicalis.
Uffe Hellsten, Richard M Harland, Michael J Gilchrist, David Hendrix, Jerzy Jurka, Nicholas H Putnam

Science· April 2010

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The dynamic genome of Hydra.
Jarrod A Chapman, Ewen F Kirkness, Oleg Simakov, Steven E Hampson, Therese Mitros, Nicholas H Putnam

Nature· March 2010

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