Publications by authors named "Stephen Bryant"

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Enhancing Gen3 for clinical trial time series analytics and data discovery: a data commons framework for NIH clinical trials.
Meredith C B Adams, Colin Griffin, Hunter Adams, Stephen Bryant, Robert W Hurley

Front Digit Health· July 2025

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Adapting the open-source Gen3 platform and kubernetes for the NIH HEAL IMPOWR and MIRHIQL clinical trial data commons: Customization, cloud transition, and optimization.
Meredith C B Adams, Colin Griffin, Hunter Adams, Stephen Bryant, Robert W Hurley

J Biomed Inform· November 2024

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Zinc-Acetate-Amine Complexes as Precursors to ZnO and the Effect of the Amine on Nanoparticle Morphology, Size, and Photocatalytic Activity.
Jerry D Harris, Emily A Wade, Emmaline G Ellison, Cecelia C Pena, Stephen C Bryant

Catalysts· October 2022

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Understanding the Lived Experience of North American Dental Patients With a Single-Tooth Implant in the Upper Front Region of the Mouth: Protocol for a Qualitative Study.
Kelvin Ian Afrashtehfar, Stephen Ross Bryant

JMIR Res Protoc· June 2021

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Biological Assembly Comparison with VAST.
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant

Methods Mol Biol· January 2021

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iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J Lanczycki, Renata C Geer, Stephen H Bryant

Bioinformatics· January 2020

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Open-source chemogenomic data-driven algorithms for predicting drug-target interactions.
Ming Hao, Stephen H Bryant, Yanli Wang

Brief Bioinform· July 2019

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Finding Potential Multitarget Ligands Using PubChem.
Sunghwan Kim, Benjamin A Shoemaker, Evan E Bolton, Stephen H Bryant

Methods Mol Biol· April 2019

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A new chemoinformatics approach with improved strategies for effective predictions of potential drugs.
Ming Hao, Stephen H Bryant, Yanli Wang

J Cheminform· October 2018

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Large-Scale Prediction of Drug-Target Interaction: a Data-Centric Review.
Tiejun Cheng, Ming Hao, Takako Takeda, Stephen H Bryant, Yanli Wang

AAPS J· September 2017

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PubChem BioAssay: A Decade's Development toward Open High-Throughput Screening Data Sharing.
Yanli Wang, Tiejun Cheng, Stephen H Bryant

SLAS Discov· July 2017

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Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites.
Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H Bryant, Yanli Wang

Bioinformatics· June 2017

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High-Throughput Screening Assay Datasets from the PubChem Database.
Mariusz Butkiewicz, Yanli Wang, Stephen H Bryant, Edward W Lowe, David C Weaver

Chem Inform· April 2017

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Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge.
Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H Bryant, Yanli Wang

J Cheminform· March 2017

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PubChem BioAssay: 2017 update.
Yanli Wang, Stephen H Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte

Nucleic Acids Res· January 2017

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CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Aron Marchler-Bauer, Yu Bo, Lianyi Han, Jane He, Christopher J Lanczycki, Stephen H Bryant

Nucleic Acids Res· January 2017

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Predicting drug-target interactions by dual-network integrated logistic matrix factorization.
Ming Hao, Stephen H Bryant, Yanli Wang

Sci Rep· January 2017

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Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets.
Sunghwan Kim, Evan E Bolton, Stephen H Bryant

J Cheminform· November 2016

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Cheminformatics analysis of the AR agonist and antagonist datasets in PubChem.
Ming Hao, Stephen H Bryant, Yanli Wang

J Cheminform· July 2016

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Literature information in PubChem: associations between PubChem records and scientific articles.
Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Bo Yu, Benjamin A Shoemaker, Stephen H Bryant

J Cheminform· June 2016

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Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold.
Takako Takeda, Yanli Wang, Stephen H Bryant

J Comput Aided Mol Des· April 2016

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Improved prediction of drug-target interactions using regularized least squares integrating with kernel fusion technique.
Ming Hao, Yanli Wang, Stephen H Bryant

Anal Chim Acta· February 2016

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PubChem Substance and Compound databases.
Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Stephen H Bryant

Nucleic Acids Res· January 2016

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Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.
Xiang Yu, Lewis Y Geer, Lianyi Han, Stephen H Bryant

J Cheminform· November 2015

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PubChem atom environments.
Volker D Hähnke, Evan E Bolton, Stephen H Bryant

J Cheminform· August 2015

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