Publications by authors named "Victor Kunin"

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Effects of OTU clustering and PCR artifacts on microbial diversity estimates.
Nastassia V Patin, Victor Kunin, Ulrika Lidström, Matthew N Ashby

Microb Ecol· April 2013

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Defining the core Arabidopsis thaliana root microbiome.
Derek S Lundberg, Sarah L Lebeis, Sur Herrera Paredes, Scott Yourstone, Jase Gehring, Victor Kunin

Nature· August 2012

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness.
Anna Engelbrektson, Victor Kunin, Kelly C Wrighton, Natasha Zvenigorodsky, Feng Chen

ISME J· May 2010

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Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.
Shaomei He, Victor Kunin, Matthew Haynes, Hector Garcia Martin, Natalia Ivanova

Environ Microbiol· May 2010

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.
Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz

Environ Microbiol· January 2010

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Dongying Wu, Philip Hugenholtz, Konstantinos Mavromatis, Rüdiger Pukall, Eileen Dalin, Victor Kunin

Nature· December 2009

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.
Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper, Victor Kunin

PLoS One· March 2009

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A bioinformatician's guide to metagenomics.
Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz

Microbiol Mol Biol Rev· December 2008

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Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.
Victor Kunin, Jeroen Raes, J Kirk Harris, John R Spear, Jeffrey J Walker

Mol Syst Biol· August 2008

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A korarchaeal genome reveals insights into the evolution of the Archaea.
James G Elkins, Mircea Podar, David E Graham, Kira S Makarova, Yuri Wolf, Victor Kunin

Proc Natl Acad Sci U S A· June 2008

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CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.
Rotem Sorek, Victor Kunin, Philip Hugenholtz

Nat Rev Microbiol· March 2008

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A bacterial metapopulation adapts locally to phage predation despite global dispersal.
Victor Kunin, Shaomei He, Falk Warnecke, S Brook Peterson, Hector Garcia Martin

Genome Res· February 2008

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Denoising inferred functional association networks obtained by gene fusion analysis.
Atanas Kamburov, Leon Goldovsky, Shiri Freilich, Aliki Kapazoglou, Victor Kunin

BMC Genomics· December 2007

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Evolutionary conservation of sequence and secondary structures in CRISPR repeats.
Victor Kunin, Rotem Sorek, Philip Hugenholtz

Genome Biol· November 2007

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Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Falk Warnecke, Peter Luginbühl, Natalia Ivanova, Majid Ghassemian, Toby H Richardson, Victor Kunin

Nature· November 2007

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TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.
Shengyin Gu, Iain Anderson, Victor Kunin, Michael Cipriano, Simon Minovitsky

Bioinformatics· March 2007

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
Héctor García Martín, Natalia Ivanova, Victor Kunin, Falk Warnecke, Kerrie W Barry

Nat Biotechnol· October 2006

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An experimental metagenome data management and analysis system.
Victor M Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Victor Kunin

Bioinformatics· July 2006

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A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective.
Christos A Ouzounis, Victor Kunin, Nikos Darzentas, Leon Goldovsky

Res Microbiol· May 2006

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CoGenT++: an extensive and extensible data environment for computational genomics.
Leon Goldovsky, Paul Janssen, Dag Ahrén, Benjamin Audit, Ildefonso Cases, Victor Kunin

Bioinformatics· October 2005

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.
Peter D Karp, Christos A Ouzounis, Caroline Moore-Kochlacs, Leon Goldovsky, Pallavi Kaipa, Victor Kunin

Nucleic Acids Res· October 2005

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MagicMatch--cross-referencing sequence identifiers across databases.
Mike Smith, Victor Kunin, Leon Goldovsky, Anton J Enright, Christos A Ouzounis

Bioinformatics· August 2005

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The net of life: reconstructing the microbial phylogenetic network.
Victor Kunin, Leon Goldovsky, Nikos Darzentas, Christos A Ouzounis

Genome Res· July 2005

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The properties of protein family space depend on experimental design.
Victor Kunin, Sarah A Teichmann, Martijn A Huynen, Christos A Ouzounis

Bioinformatics· June 2005

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Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications.
Paul Janssen, Leon Goldovsky, Victor Kunin, Nikos Darzentas, Christos A Ouzounis

EMBO Rep· May 2005

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