Publications by authors named "Amit Upadhyay"

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Analyzing Coherence Effects in Multisite Electronic Excitation Transport Using the Incoherent Born-Markov Rate Model.
Amit Kumar Upadhyay, Karthik Sasihithlu

J Phys Chem B· November 2025

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Primate resident memory T cells activate humoral and stromal immunity.
Vineet Joag, Benjamin N Bimber, Clare F Quarnstrom, Venkata S Bollimpelli, Jason M Schenkel, Amit A Upadhyay

Immunity· October 2025

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Effect of urea and squaramide IMPDH inhibitors on C. parvum: in vitro trial design impacts the assessment of drug efficacy.
Anne-Charlotte Lenière, Amit Upadhyay, Jérôme Follet, Timothy P O'Sullivan

Int J Parasitol Drugs Drug Resist· August 2025

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Electronic Excitation Transfer Dynamics in a 3-Site System Using an Incoherent Born-Markov Rate Model.
Amit Kumar Upadhyay, Karthik Sasihithlu

Chemphyschem· August 2025

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Diverse priming outcomes under conditions of very rare precursor B cells.
Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Amit A Upadhyay

Immunity· April 2025

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A Broad Survey and Functional Analysis of Immunoglobulin Loci Variation in Rhesus Macaques.
Ayelet Peres, Amit A Upadhyay, Vered Hana Klein, Swati Saha, Oscar L Rodriguez

bioRxiv· March 2025

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Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques.
Christopher T Edwards, Kirti A Karunakaran, Elijah Garcia, Nathan Beutler, Matthew Gagne, Amit A Upadhyay

PLoS Pathog· January 2025

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Synthesis, evaluation and mechanistic insights of novel IMPDH inhibitors targeting ESKAPEE bacteria.
Nour Ayoub, Amit Upadhyay, Arnaud Tête, Nicolas Pietrancosta, Hélène Munier-Lehmann

Eur J Med Chem· December 2024

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Surface elemental and structural analysis of ancient Indian punch-marked coins (600 to 200 BCE): insights into metallurgy and economic practices.
Amit Kumar Upadhyay, Neeraj Kumar Giri, Rajiv Prakash, Hirdyesh Mishra

Sci Rep· December 2024

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Diverse priming outcomes under conditions of very rare precursor B cells.
Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Amit A Upadhyay

bioRxiv· November 2024

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Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques.
Christopher T Edwards, Kirti A Karunakaran, Elijah Garcia, Nathan Beutler, Matthew Gagne, Amit A Upadhyay

bioRxiv· July 2024

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Tunability in 3-Site Electronic Excitation Transfer Dynamics: Insights into the Role of Perturbative Coupling.
Amit Kumar Upadhyay, Karthik Sasihithlu

J Phys Chem B· May 2024

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Natural killer-like B cells are a distinct but infrequent innate immune cell subset modulated by SIV infection of rhesus macaques.
Cordelia Manickam, Amit A Upadhyay, Griffin Woolley, Kyle W Kroll, Karen Terry

PLoS Pathog· May 2024

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Frequency-potency analysis of IgG+ memory B cells delineates neutralizing antibody responses at single-cell resolution.
Michelle K Tenggara, Seo-Ho Oh, Catherine Yang, Hardik K Nariya, Amanda M Metz, Amit A Upadhyay

Cell Rep· March 2024

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European Consensus Guidelines on the Management of Respiratory Distress Syndrome, 2022 : What is New?
Amit Upadhyay, Pratima Anand

Indian Pediatr· December 2023

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High throughput analysis of B cell dynamics and neutralizing antibody development during immunization with a novel clade C HIV-1 envelope.
Rohini Mopuri, Sarah Welbourn, Tysheena Charles, Pooja Ralli-Jain, David Rosales, Amit A Upadhyay

PLoS Pathog· October 2023

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Intradermal but not intramuscular modified vaccinia Ankara immunizations protect against intravaginal tier2 simian-human immunodeficiency virus challenges in female macaques.
Venkata S Bollimpelli, Pradeep B J Reddy, Sailaja Gangadhara, Tysheena P Charles, Samantha L Burton, Amit A Upadhyay

Nat Commun· August 2023

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Modulation of type I interferon responses potently inhibits SARS-CoV-2 replication and inflammation in rhesus macaques.
Elise G Viox, Timothy N Hoang, Amit A Upadhyay, Rayhane Nchioua, Maximilian Hirschenberger

Sci Immunol· July 2023

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TREM2 and interstitial-like macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques.
Amit A Upadhyay, Elise G Viox, Timothy N Hoang, Arun K Boddapati, Maria Pino

Nat Commun· April 2023

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Comparative effect of 1.2% atorvastatin gel and 1.2% rosuvastatin as a local drug delivery in treatment of intra-bony defects in chronic periodontitis.
Ashish Soni, Swati Raj, Laxmikant Kashyap, Amit Upadhyay, Vikas Chandra Agrahari

Indian J Dent Res· October 2022

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Modulation of type I interferon responses potently inhibits SARS-CoV-2 replication and inflammation in rhesus macaques.
Timothy N Hoang, Elise G Viox, Amit A Upadhyay, Zachary Strongin, Gregory K Tharp

bioRxiv· October 2022

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Nasal High-Flow Therapy vs Standard Care During Neonatal Endotracheal Intubation: Neonatologist's Viewpoint.
Amit Upadhyay

Indian Pediatr· August 2022

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A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence.
Sarah Welbourn, Srirupa Chakraborty, Jie E Yang, Anne S Gleinich, Sailaja Gangadhara, Amit A Upadhyay

PLoS Pathog· May 2022

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Infiltration of inflammatory macrophages and neutrophils and widespread pyroptosis in lung drive influenza lethality in nonhuman primates.
Jacqueline Corry, Gwenddolen Kettenburg, Amit A Upadhyay, Megan Wallace, Michelle M Marti

PLoS Pathog· March 2022

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From structure to sequence: Antibody discovery using cryoEM.
Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay

Sci Adv· January 2022

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