Publications by authors named "Brian Walenz"

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The formation and propagation of human Robertsonian chromosomes.
Leonardo Gomes de Lima, Andrea Guarracino, Sergey Koren, Tamara Potapova, Sean McKinney, Brian P Walenz

Nature· November 2025

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Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding.
Dmitry Antipov, Mikko Rautiainen, Sergey Nurk, Brian P Walenz, Steven J Solar

Genome Res· July 2025

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The formation and propagation of human Robertsonian chromosomes.
Leonardo Gomes de Lima, Andrea Guarracino, Sergey Koren, Tamara Potapova, Sean McKinney, Brian P Walenz

bioRxiv· September 2024

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Telomere-to-telomere assembly of diploid chromosomes with Verkko.
Mikko Rautiainen, Sergey Nurk, Brian P Walenz, Glennis A Logsdon, David Porubsky

Nat Biotechnol· October 2023

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The complete sequence of a human Y chromosome.
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Brian P Walenz

Nature· September 2023

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A draft human pangenome reference.
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Brian Walenz

Nature· May 2023

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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation.
Giulio Formenti, Arang Rhie, Brian P Walenz, Françoise Thibaud-Nissen, Kishwar Shafin

Nat Methods· June 2022

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Towards complete and error-free genome assemblies of all vertebrate species.
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Brian P Walenz

Nature· April 2021

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The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.
Jung-Hyun Kim, Vladimir N Noskov, Aleksey Y Ogurtsov, Ramaiah Nagaraja, Nikolai Petrov, Brian P Walenz

Sci Rep· February 2021

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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon

Genome Res· September 2020

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Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Arang Rhie, Brian P Walenz, Sergey Koren, Adam M Phillippy

Genome Biol· September 2020

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Weighted minimizer sampling improves long read mapping.
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian P Walenz

Bioinformatics· July 2020

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Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Shujun Ou, Jianing Liu, Kapeel M Chougule, Arkarachai Fungtammasan, Arun S Seetharam, Brian P Walenz

Nat Commun· May 2020

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Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.
Theodore S Kalbfleisch, Edward S Rice, Michael S DePriest, Brian P Walenz, Matthew S Hestand

Commun Biol· September 2019

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
Jay Ghurye, Arang Rhie, Brian P Walenz, Anthony Schmitt, Siddarth Selvaraj

PLoS Comput Biol· August 2019

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Improved reference genome for the domestic horse increases assembly contiguity and composition.
Theodore S Kalbfleisch, Edward S Rice, Michael S DePriest, Brian P Walenz, Matthew S Hestand

Commun Biol· November 2018

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De novo assembly of haplotype-resolved genomes with trio binning.
Sergey Koren, Arang Rhie, Brian P Walenz, Alexander T Dilthey, Derek M Bickhart

Nat Biotechnol· October 2018

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Hybrid assembly with long and short reads improves discovery of gene family expansions.
Jason R Miller, Peng Zhou, Joann Mudge, James Gurtowski, Hayan Lee, Brian P Walenz

BMC Genomics· July 2017

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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman

Genome Res· May 2017

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An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.
Ole K Tørresen, Bastiaan Star, Sissel Jentoft, William B Reinar, Harald Grove, Brian P Walenz

BMC Genomics· January 2017

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The Atlantic salmon genome provides insights into rediploidization.
Sigbjørn Lien, Ben F Koop, Simen R Sandve, Jason R Miller, Matthew P Kent, Brian Walenz

Nature· May 2016

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Genomic insights into the Ixodes scapularis tick vector of Lyme disease.
Monika Gulia-Nuss, Andrew B Nuss, Jason M Meyer, Daniel E Sonenshine, R Michael Roe, Brian P Walenz

Nat Commun· February 2016

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The genome of Anopheles darlingi, the main neotropical malaria vector.
Osvaldo Marinotti, Gustavo C Cerqueira, Luiz Gonzaga Paula de Almeida, Maria Inês Tiraboschi Ferro, Elgion Lucio da Silva Loreto, Brian P Walenz

Nucleic Acids Res· August 2013

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Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Sergey Koren, Michael C Schatz, Brian P Walenz, Jeffrey Martin, Jason T Howard

Nat Biotechnol· July 2012

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