Publications by authors named "Timothy Fenn"

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Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment.
Rose A Gogal, Aaron J Nessler, Andrew C Thiel, Hernan V Bernabe, Rae A Corrigan Grove, Timothy D Fenn

J Chem Phys· July 2024

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Distinct immune stimulatory effects of anti-human VISTA antibodies are determined by Fc-receptor interaction.
Sven Mostböck, Helen Haixia Wu, Timothy Fenn, Bettina Riegler, Susanne Strahlhofer

Front Immunol· August 2022

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Dead-End Elimination with a Polarizable Force Field Repacks PCNA Structures.
Stephen D LuCore, Jacob M Litman, Kyle T Powers, Shibo Gao, Ava M Lynn, Timothy D Fenn

Biophys J· August 2015

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Processive ATP-driven substrate disassembly by the N-ethylmaleimide-sensitive factor (NSF) molecular machine.
Daniel J Cipriano, Jaemyeong Jung, Sandro Vivona, Timothy D Fenn, Axel T Brunger

J Biol Chem· August 2013

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D
Disassembly of all SNARE complexes by N-ethylmaleimide-sensitive factor (NSF) is initiated by a conserved 1:1 interaction between α-soluble NSF attachment protein (SNAP) and SNARE complex.
Sandro Vivona, Daniel J Cipriano, Seán O'Leary, Ye Henry Li, Timothy D Fenn

J Biol Chem· August 2013

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Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.
Paul A Sigala, Aaron T Fafarman, Jason P Schwans, Stephen D Fried, Timothy D Fenn

Proc Natl Acad Sci U S A· July 2013

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Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures.
Stephen E Kaiser, Kai Mao, Asad M Taherbhoy, Shanshan Yu, Jennifer L Olszewski, Timothy D Fenn

Nat Struct Mol Biol· December 2012

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Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.
Aaron T Fafarman, Paul A Sigala, Jason P Schwans, Timothy D Fenn, Daniel Herschlag

Proc Natl Acad Sci U S A· February 2012

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High-resolution analysis of Zn(2+) coordination in the alkaline phosphatase superfamily by EXAFS and x-ray crystallography.
Elena Bobyr, Jonathan K Lassila, Helen I Wiersma-Koch, Timothy D Fenn, Jason J Lee

J Mol Biol· January 2012

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Polarizable Atomic Multipole X-Ray Refinement: Particle Mesh Ewald Electrostatics for Macromolecular Crystals.
Michael J Schnieders, Timothy D Fenn, Vijay S Pande

J Chem Theory Comput· April 2011

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Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration.
Timothy D Fenn, Michael J Schnieders, Marat Mustyakimov, Chuanjie Wu, Paul Langan

Structure· April 2011

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Polarizable atomic multipole x-ray refinement: hydration geometry and application to macromolecules.
Timothy D Fenn, Michael J Schnieders, Axel T Brunger, Vijay S Pande

Biophys J· June 2010

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Dissecting the paradoxical effects of hydrogen bond mutations in the ketosteroid isomerase oxyanion hole.
Daniel A Kraut, Paul A Sigala, Timothy D Fenn, Daniel Herschlag

Proc Natl Acad Sci U S A· February 2010

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Polarizable atomic multipole X-ray refinement: application to peptide crystals.
Michael J Schnieders, Timothy D Fenn, Vijay S Pande, Axel T Brunger

Acta Crystallogr D Biol Crystallogr· September 2009

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Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.
Jesse G Zalatan, Timothy D Fenn, Daniel Herschlag

J Mol Biol· December 2008

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A potent peptidomimetic inhibitor of botulinum neurotoxin serotype A has a very different conformation than SNAP-25 substrate.
Jorge E Zuniga, James J Schmidt, Timothy Fenn, James C Burnett, Demet Araç

Structure· October 2008

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Arginine coordination in enzymatic phosphoryl transfer: evaluation of the effect of Arg166 mutations in Escherichia coli alkaline phosphatase.
Patrick J O'Brien, Jonathan Kyle Lassila, Timothy D Fenn, Jesse G Zalatan, Daniel Herschlag

Biochemistry· July 2008

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Rab and Arl GTPase family members cooperate in the localization of the golgin GCC185.
Alondra Schweizer Burguete, Timothy D Fenn, Axel T Brunger, Suzanne R Pfeffer

Cell· January 2008

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C
Crystal structures of the luciferase and green fluorescent protein from Renilla reniformis.
Andreas Markus Loening, Timothy David Fenn, Sanjiv Sam Gambhir

J Mol Biol· December 2007

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Consensus guided mutagenesis of Renilla luciferase yields enhanced stability and light output.
Andreas Markus Loening, Timothy David Fenn, Anna M Wu, Sanjiv Sam Gambhir

Protein Eng Des Sel· September 2006

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Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution.
Jesse G Zalatan, Timothy D Fenn, Axel T Brunger, Daniel Herschlag

Biochemistry· August 2006

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Effect of a Y265F mutant on the transamination-based cycloserine inactivation of alanine racemase.
Timothy D Fenn, Todd Holyoak, Geoffrey F Stamper, Dagmar Ringe

Biochemistry· April 2005

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Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift.
Timothy D Fenn, Dagmar Ringe, Gregory A Petsko

Biochemistry· June 2004

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M
Malonate: a versatile cryoprotectant and stabilizing solution for salt-grown macromolecular crystals.
Todd Holyoak, Timothy D Fenn, Mark A Wilson, Aaron G Moulin, Dagmar Ringe

Acta Crystallogr D Biol Crystallogr· December 2003

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2
2.4 A resolution crystal structure of the prototypical hormone-processing protease Kex2 in complex with an Ala-Lys-Arg boronic acid inhibitor.
Todd Holyoak, Mark A Wilson, Timothy D Fenn, Charles A Kettner, Gregory A Petsko

Biochemistry· June 2003

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