Publications by authors named "Nikolai Slavov"

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Alternate RNA decoding results in stable and abundant proteins in mammals.
Shira Tsour, Rainer Machne, Andrew Leduc, Simon Widmer, Eunice Koo, Jeremy Guez, Konrad Karczewski, Nikolai Slavov

bioRxiv· October 2025

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Impact of protein degradation and cell growth on mammalian proteomes.
Andrew Leduc, Shanshan Zheng, Purvi Saxena, Nikolai Slavov

bioRxiv· April 2025

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Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP.
Andrew Leduc, Luke Khoury, Joshua Cantlon, Saad Khan, Nikolai Slavov

December 2024

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Limiting the impact of protein leakage in single-cell proteomics.
Andrew Leduc, Yanxin Xu, Gergana Shipkovenska, Zhixun Dou, Nikolai Slavov

bioRxiv· July 2024

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Single-nucleus proteomics identifies regulators of protein transport.
Jason Derks, Tobias Jonson, Andrew Leduc, Saad Khan, Luke Khoury, Mahmoud-Reza Rafiee, Nikolai Slavov

bioRxiv· June 2024

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Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP.
Andrew Leduc, Luke Koury, Joshua Cantlon, Nikolai Slavov

November 2023

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Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
R Gray Huffman, Andrew Leduc, Christoph Wichmann, Marco Di Gioia, Francesco Borriello, Harrison Specht, Jason Derks, Saad Khan, Luke Khoury, Edward Emmott

Nat Methods· May 2023

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Sampling the proteome by emerging single-molecule and mass spectrometry methods.
Michael J MacCoss, Javier Antonio Alfaro, Danielle A Faivre, Christine C Wu, Meni Wanunu, Nikolai Slavov

March 2023

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Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA.
Jason Derks, Nikolai Slavov

March 2023

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Increasing the throughput of sensitive proteomics by plexDIA.
Jason Derks, Andrew Leduc, Georg Wallmann, R Gray Huffman, Matthew Willetts, Saad Khan, Harrison Specht, Markus Ralser, Vadim Demichev, Nikolai Slavov

January 2023

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Exploring functional protein covariation across single cells using nPOP.
Andrew Leduc, R Gray Huffman, Joshua Cantlon, Saad Khan, Nikolai Slavov

Genome Biol· December 2022

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Scaling Up Single-Cell Proteomics.
Nikolai Slavov

Mol Cell Proteomics· January 2022

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Learning from natural variation across the proteomes of single cells.
Nikolai Slavov

January 2022

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Counting protein molecules for single-cell proteomics.
Nikolai Slavov

Cell· January 2022

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Multiplexed single-cell proteomics using SCoPE2.
Aleksandra A Petelski, Edward Emmott, Andrew Leduc, R Gray Huffman, Harrison Specht, David H Perlman, Nikolai Slavov

Nat Protoc· December 2021

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Driving Single Cell Proteomics Forward with Innovation.
Nikolai Slavov

J Proteome Res· November 2021

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Single-cell protein analysis by mass spectrometry.
Nikolai Slavov

February 2021

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Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2.
Harrison Specht, Edward Emmott, Aleksandra A Petelski, R Gray Huffman, David H Perlman, Marco Serra, Peter Kharchenko, Antonius Koller, Nikolai Slavov

January 2021

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Optimizing Accuracy and Depth of Protein Quantification in Experiments Using Isobaric Carriers.
Harrison Specht, Nikolai Slavov

January 2021

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Unpicking the proteome in single cells.
Nikolai Slavov

Science· January 2020

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DART-ID increases single-cell proteome coverage.
Albert Tian Chen, Alexander Franks, Nikolai Slavov

PLoS Comput Biol· July 2019

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DO-MS: Data-Driven Optimization of Mass Spectrometry Methods.
R Gray Huffman, Albert Chen, Harrison Specht, Nikolai Slavov

June 2019

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Approaches for Studying Ribosome Specialization.
Edward Emmott, Marko Jovanovic, Nikolai Slavov

May 2019

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Ribosome Stoichiometry: From Form to Function.
Edward Emmott, Marko Jovanovic, Nikolai Slavov

Trends Biochem Sci· February 2019

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SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation.
Bogdan Budnik, Ezra Levy, Guillaume Harmange, Nikolai Slavov

October 2018

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Transformative Opportunities for Single-Cell Proteomics.
Harrison Specht, Nikolai Slavov

J Proteome Res· August 2018

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Differential Stoichiometry among Core Ribosomal Proteins.
Nikolai Slavov, Stefan Semrau, Edoardo Airoldi, Bogdan Budnik, Alexander van Oudenaarden

Cell Rep· November 2015

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Fertilization triggers early proteomic symmetry breaking in mammalian embryos.
Lisa K Iwamoto-Stohl, Aleksandra A Petelski, Baiyi Quan, Maciej Meglicki, Audrey Fu, Nikolai Slavov

Cell· December 2025

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Artificial intelligence in metabolic research.
Jens Juul Holst, Camilla Schéele, Philipp E Scherer, Weiping Jia, Eran Segal, Nikolai Slavov

Nat Metab· November 2025

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Principles of protein abundance regulation across single cells in a mammalian tissue.
Andrew Leduc, Gergana Shipkovenska, Yanxin Xu, Alexander Franks, Nikolai Slavov

bioRxiv· October 2025

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Slice-PASEF: Maximising Ion Utilisation in LC-MS Proteomics.
Ludwig R Sinn, Lukasz Szyrwiel, Justus Grossmann, Kate Lau, Katharina Faisst, Nikolai Slavov

bioRxiv· September 2025

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Composition and RNA binding specificity of metazoan RNase MRP.
Yuan Liu, Shiyang He, Kawon Pyo, Shanshan Zheng, Meijuan Chen, Nikolai Slavov

Nucleic Acids Res· August 2025

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Single-Cell Proteomic Technologies: Tools in the quest for principles.
Nikolai Slavov

ArXiv· June 2025

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Limiting the impact of protein leakage in single-cell proteomics.
Andrew Leduc, Yanxin Xu, Gergana Shipkovenska, Zhixun Dou, Nikolai Slavov

Nat Commun· May 2025

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Increasing mass spectrometry throughput using time-encoded sample multiplexing.
Jason Derks, Kevin McDonnell, Nathan Wamsley, Peyton Stewart, Maddy Yeh, Nikolai Slavov

bioRxiv· May 2025

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Ubiquitin-Proteasome System Dysregulation in Alzheimer's Disease Impacts Protein Abundance.
Mahlon Collins, Corinna Friedrich, Megan Elcheikhali, Peyton Stewart, Jason Derks, Nikolai Slavov

bioRxiv· May 2025

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Dynamics of Single-Cell Protein Covariation during Epithelial-Mesenchymal Transition.
Saad Khan, Rachel Conover, Anand R Asthagiri, Nikolai Slavov

J Proteome Res· April 2025

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Unlocking the Potential of Single-Cell Omics.
Nikolai Slavov

J Proteome Res· April 2025

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Composition and RNA binding specificity of metazoan RNase MRP.
Yuan Liu, Shiyang He, Anzie Pyo, Shanshan Zheng, Meijuan Chen, Nikolai Slavov

bioRxiv· February 2025

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Post-transcriptional cross- and auto-regulation buffer expression of the human RNA helicases and .
Shruthi Rengarajan, Jason Derks, Daniel W Bellott, Nikolai Slavov, David C Page

Genome Res· January 2025

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SenNet recommendations for detecting senescent cells in different tissues.
Vidyani Suryadevara, Adam D Hudgins, Adarsh Rajesh, Alberto Pappalardo, Alla Karpova, Nikolai Slavov

Nat Rev Mol Cell Biol· December 2024

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Inferring post-transcriptional regulation within and across cell types in human testis.
Saad Khan, Megan Elcheikhali, Andrew Leduc, R Gray Huffman, Jason Derks, Nikolai Slavov

bioRxiv· October 2024

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Controlling Pericellular Oxygen Tension in Cell Culture Reveals Distinct Breast Cancer Responses to Low Oxygen Tensions.
Zachary J Rogers, Thibault Colombani, Saad Khan, Khushbu Bhatt, Alexandra Nukovic, Nikolai Slavov

Adv Sci (Weinh)· August 2024

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Post-transcriptional cross- and auto-regulation buffer expression of the human RNA helicases and .
Shruthi Rengarajan, Jason Derks, Daniel W Bellott, Nikolai Slavov, David C Page

bioRxiv· July 2024

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Single-cell proteomics reveals decreased abundance of proteostasis and meiosis proteins in advanced maternal age oocytes.
Styliani Galatidou, Aleksandra A Petelski, Aïda Pujol, Karinna Lattes, Lais B Latorraca, Nikolai Slavov

Mol Hum Reprod· June 2024

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Single-Cell Proteomics Accelerates toward Proteoforms.
Sarah N Sipe, Nikolai Slavov

J Proteome Res· May 2024

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